LOCUS BC041814 4146 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens cryptochrome 2 (photolyase-like), mRNA (cDNA clone
MGC:43402 IMAGE:5266781), complete cds.
ACCESSION BC041814
VERSION BC041814.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4146)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4146)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 74 Row: a Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29789121.
FEATURES Location/Qualifiers
source 1..4146
/db_xref="H-InvDB:HIT000052623"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43402 IMAGE:5266781"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4146
/gene="CRY2"
/gene_synonym="HCRY2"
/gene_synonym="KIAA0658"
/gene_synonym="PHLL2"
/db_xref="GeneID:1408"
/db_xref="HGNC:HGNC:2385"
/db_xref="MIM:603732"
CDS 14..1795
/gene="CRY2"
/gene_synonym="HCRY2"
/gene_synonym="KIAA0658"
/gene_synonym="PHLL2"
/codon_start=1
/product="cryptochrome 2 (photolyase-like)"
/protein_id="AAH41814.1"
/db_xref="GeneID:1408"
/db_xref="HGNC:HGNC:2385"
/db_xref="MIM:603732"
/translation="MAATVATAAAVAPAPAPGTDSASSVHWFRKGLRLHDNPALLAAV
RGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADV
FPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIEL
NGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELG
FPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRF
GCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC
IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVS
WESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRR
YLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQ
QLSRYRGLCLLASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAA
EEPPGEELSKRARVAELPTPELPSKDA"
BASE COUNT 895 a 1177 c 1169 g 905 t
ORIGIN
1 agtctggaca gtcatggcgg cgactgtggc gacggcggca gctgtggccc cggcgccagc
61 gcccggcacg gacagcgcct cttcggtgca ctggttccgc aaagggctgc gactccacga
121 caacccggcg ttgctggcgg ccgtgcgcgg ggcgcgctgc gtgcgctgcg tttacattct
181 cgacccgtgg ttcgcggcct cctcctcagt cgggatcaac cgatggaggt tcctacttca
241 gtctctggaa gatttggaca caagtttaag gaaactgaac tcccgcctgt ttgtagtccg
301 gggacagcca gccgacgtgt tcccaaggct gttcaaggaa tggggagtga cccgcttgac
361 ctttgaatat gactctgaac cctttgggaa agaacgggat gcagccatca tgaagatggc
421 caaggaggct ggtgtggaag tagtgacgga gaattctcat accctctatg acctggacag
481 gatcattgag ctgaatgggc agaagccacc ccttacatac aagcgctttc aggccatcat
541 cagccgcatg gagctgccca agaagccagt gggcttggtg accagccagc agatggagag
601 ctgcagggcc gagatccagg agaaccacga cgagacctac ggcgtgccct ccctggagga
661 gctggggttc cccactgaag gacttggtcc agctgtctgg cagggaggag agacagaagc
721 tctggcccgc ctggataagc acttggaacg gaaggcctgg gttgccaact atgagagacc
781 ccgaatgaac gccaactccc tcctggccag ccccacaggc ctcagcccct acctgcgctt
841 tggttgtctc tcctgccgcc tcttctacta ccgcctgtgg gacctgtata aaaaggtgaa
901 gcggaacagc acacctcccc tctccctatt tgggcaactc ctatggcgag agttcttcta
961 cacggcagct accaacaacc ccaggtttga ccgcatggag gggaacccca tctgcatcca
1021 gatcccctgg gaccgcaatc ctgaggccct ggccaagtgg gctgagggca agacaggctt
1081 cccttggatt gatgccatca tgacccaact gaggcaggag ggctggatcc accacctggc
1141 ccggcatgcc gtggcctgct tcctgacccg cggggacctc tgggtcagct gggagagcgg
1201 ggtccgggta tttgatgagc tgctcctgga tgcagatttc agcgtgaacg caggcagctg
1261 gatgtggctg tcctgcagtg ctttcttcca gcagttcttc cactgctact gccctgtggg
1321 ctttggccgt cgcacggacc ccagtgggga ctacatcagg cgatacctgc ccaaattgaa
1381 agcgttcccc tctcgataca tctatgagcc ctggaatgcc ccagagtcaa ttcagaaggc
1441 agccaagtgc atcattggtg tggactaccc acggcccatc gtcaaccatg ccgagaccag
1501 ccggcttaac attgaacgaa tgaagcagat ttaccagcag ctttcgcgct accggggact
1561 ctgtctactg gcatctgtcc cttcctgtgt ggaagacctc agtcaccctg tggcagagcc
1621 cagctcgagc caggctggca gcatgagcag tgcaggccca agaccactac ccagtggccc
1681 agcatccccc aaacgcaagc tggaagcagc cgaggaacca cctggtgaag aactcagcaa
1741 acgggcccgg gtggcagagt tgccaacccc agagctgccg agcaaggatg cctgagactg
1801 cagagccctt gctccgtgag caaagcctgg gtgcccaagc agccaccgca gcagcagagt
1861 acaacctgca gagaagctga tcaccgggca gagatagagc gagcatgtgt gtgtgtgtgc
1921 gcgtgtgcag aggagggagt ggtgtgcctg tttgtgtgtg catgcatctg ttgacactca
1981 tgattctgaa tgttgcctgg gctgggggag tacctgtagc acgccagtgc tgtttcccgg
2041 cctccagaca caaggctcga ggttatggca gtgactttca gctgagacct gttcctgcaa
2101 gccagctgcc ttgtctgaac agaacgtagt ggtaggaccc tagctgggat tctggcatct
2161 gcctccctag acctccttcc ctccctcctc acgtcaggct gtggagcagg agcacagcag
2221 ttctggctgt tgtccaaagc atgggattct ggaggcagcc agagccctgc tgagttcctg
2281 ctttctgacc tggaggctga gcaggccgga gtggatggat gctgtccaga cgtagccacc
2341 tggcctctgt ttcttatttt aaaattctct gctactgggc tcagtcccag gcccttcctt
2401 gggcttctgg gactgagcat gaggccatag acagatctaa aaagtttcca ccaccctaca
2461 gaagtacaca cagatacctg actggtgtgg ggtatgcctg gtactgtaat aggagcctaa
2521 gacagcacac ctaccttttc aggatttaga acctaaaatt agaaagagaa tcccagctgt
2581 cattgttcct tccccagaag ctaagagcca gcctcagagc ctacccagga gctgtgaagg
2641 ggcaagggtc aaactgactc actctaccag gaggagacca ggttgcagtg gcgtaaggcc
2701 ccctggtttc tctggccaca ctccaaggca ccacagtgct gccagtgagg acagctgaca
2761 cccagccagg gaaaccattc tagtctttat tctgttggct tccagggcct gtcctggact
2821 tgtcagcatc cagactgcca tgtcagctat cccagtagct gagctccaag gactcaggca
2881 gagggactca gggatgggga ctgccagggg cagttggcaa aagtccaagt agagattaca
2941 cccagcacac cattccttcc aggagcagta ggtgggaggt ttgacccaga gaagccaatc
3001 cttgcattcc aggagtggcc tgtgcctccc acctcttcct tcccactgcc aaaggcctgt
3061 gttgagaaag atgtcatgca aaaggacgac ggtggccaac taaagcaagt cttccttcca
3121 ccctgtggcc tgcacttgag ccacaaagtg tgtgtgtgtg tgtgcgtgtg tggtacgtgt
3181 gtgtgtgtgt ggctatgagg ctgattcctg tttggatttt tgtcctcacg tgtatcatta
3241 agctggcctt tgggcctttt cctttctacc tcccctgtga cctttcctag cctcagatct
3301 gttaattctt ttggccccag ccctgtccct cactgtcctc tgtccttgga ccagaaccct
3361 ggggtcagac ccatctcctg tagctgtcca tcacactgac aggcttcttc ctgagatatc
3421 ctcaggtttt ctcagccaga gagctgcctt tagagtccaa ctgttgtacg tatgtcacct
3481 tcactagaaa tgtcccatca tcgtgggagg ggagcagggc acaggggatg gtgtgcattc
3541 agagcattgg gttgggggct tccctgttcc ctcagcccca gtcgagagga aagagaatcg
3601 ggccactgcc agaaagagag tcaagcaaac ctggaagggc aaatctgaga gtgggaaggc
3661 caaaggccga ggcccagatt tagtattcac tagcagcgcc ttcgggtagc aggatgattc
3721 cttttcctgc ctgtctgctg ctggctctct tccctaaggt acaggttggc aggaccacct
3781 ccgcctactt ctccaccatc cctagcatgc cagcccgttc ccagatcaac ctgccagtgg
3841 agtcaggcag tgcactcctg gagccaagag ggaagggcag ggtagagagg gtatgtccag
3901 tagcctggag ctccatggtg gcttcatgcc tcccttctcc cagctcaggt ggccctgagg
3961 gctccctcgg aacagtgcct caaatcctga cccaagggcc agcatgggga agagatggtt
4021 gcaggcaaaa tgcactttat agagattttc tattgctggg aaggtgtgtt tctcccacaa
4081 tttgtttgtg aatattcact tgttttataa atgtctgacc tgtcttgagg aaaaaaaaaa
4141 aaaaaa
//