LOCUS BC041792 4213 bp mRNA linear HUM 02-DEC-2006
DEFINITION Homo sapiens AT rich interactive domain 3B (BRIGHT-like), mRNA
(cDNA clone MGC:33888 IMAGE:5297774), complete cds.
ACCESSION BC041792
VERSION BC041792.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4213)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4213)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: m Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..4213
/db_xref="H-InvDB:HIT000052611"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33888 IMAGE:5297774"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4213
/gene="ARID3B"
/gene_synonym="BDP"
/gene_synonym="DRIL2"
/db_xref="GeneID:10620"
/db_xref="HGNC:HGNC:14350"
CDS 157..1845
/gene="ARID3B"
/gene_synonym="BDP"
/gene_synonym="DRIL2"
/codon_start=1
/product="AT rich interactive domain 3B (BRIGHT-like)"
/protein_id="AAH41792.1"
/db_xref="GeneID:10620"
/db_xref="HGNC:HGNC:14350"
/translation="MEPLQQQQQQQQQQQQKQPHLAPLQMDAREKQGQQMREAQFLYA
QKLVTQPTLLSATAGRPSGSTPLGPLARVPPTAAVAQVFERGNMNSEPEEEDGGLEDE
DGDDEVAEVAEKETQAASKYFHVQKVARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTK
DASKASPSVSTAGQPNWNLDEQLKQNGGLAWSDDADGGRGREISRDFAKLYELDGDPE
RKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREIT
KGLNLPTSITSAAFTLRTQYMKYLYAYECEKKALSSPAELQAAIDGNRREGRRPSYSS
SLFGYSPAAATAAAAAGAPALLSPPKIRFPILGLGSSSGTNTSSPRISPATTLRKGDG
APVTTVPVPNRLAVPVTLASQQAGTRTAALEQLRERLESGEPAEKKASRLSEEEQRLV
QQAFQRNFFSMARQLPMKIRINGRAEDRAEASAAALNLTTSSIGSINMSVDIDGTTYA
GVLFAQKPVVHLITGSAPQSLGSSASSSSSSHCSPSPTSSRGTPSAEPSTSWSL"
BASE COUNT 942 a 1268 c 1131 g 872 t
ORIGIN
1 agtccgagac gcagctgccg cgccggggcc tgagctgccg cctcctccgc cgcccgaaaa
61 cccggagtgc cccgcacagg tttagaccca gtgtgcctgg tgggctgtgc ccaggttcag
121 agtcatgcca ctctgtgggt gaagcttgag gcaaaaatgg agccacttca gcagcagcag
181 cagcagcagc agcagcaaca acagaagcag ccacacctgg ctcctctgca gatggatgcc
241 agagagaagc agggccagca gatgagagaa gcccagttct tgtatgccca aaagctggtc
301 acacagccga ctctcctttc cgccacagct gggagacctt ctggcagcac tcccttaggt
361 cccttagcca gagttccacc caccgcagca gtggcccaag tgtttgaacg gggcaacatg
421 aactcagagc ctgaggaaga ggacggaggt ttggaagatg aggatgggga tgatgaagtt
481 gcagaggtgg ctgagaaaga aacccaggct gcttcaaaat attttcatgt gcagaaagta
541 gctcgccaag atcccagagt ggcacccatg tccaatctac ttccagcacc agggctccca
601 ccacatggac aacaagctaa agaagaccat accaaagatg cttccaaggc ctcaccttct
661 gtctccacag caggacagcc gaactggaat ctggatgagc agctcaagca gaatggtggt
721 ttggcctgga gtgatgatgc agatggaggc cggggaagag agatctctcg agattttgcc
781 aagctgtatg aactggacgg tgatcctgaa aggaaagagt tcctggatga cctcttcgtc
841 tttatgcaga agagggggac ccccatcaac cgaatcccca tcatggccaa acagatcctg
901 gacctgtaca tgctgtataa gctggtgacc gagaagggag gcctggtgga gatcatcaac
961 aagaagatct ggagggagat caccaaaggc ctaaacctgc ccacatccat caccagcgcc
1021 gccttcaccc tcaggacgca gtacatgaag tatctgtatg cctatgagtg tgagaagaaa
1081 gccttgagtt ccccagccga gctccaggca gcaattgatg gcaaccgcag ggagggccgg
1141 cggcccagct acagctcctc cctctttggc tactcacctg ctgcggctac tgctgctgcc
1201 gctgccgggg cccctgccct tctctcccca cccaagatcc gctttcccat ccttgggctt
1261 ggctccagca gtggtaccaa taccagtagc cctcggatat ccccagcaac cactctcagg
1321 aaaggtgatg gagccccagt gacaacagtg cctgtgccaa atcgtctggc tgtgcccgtg
1381 accttggcaa gccagcaggc tggtactcgg accgccgcac tggagcagct gcgggagcgg
1441 ctggagtcag gggagcctgc tgagaagaag gcatcgaggc tgtctgagga ggagcagcgc
1501 ctggtgcagc aggccttcca gcgcaacttt ttcagcatgg cacggcagct ccccatgaag
1561 atcaggatca acggcagggc agaagacaga gcagaggcct cggctgcagc actgaacctg
1621 accacgagta gcattgggag cattaacatg tctgtggaca tcgatggcac cacctatgca
1681 ggtgtgctgt ttgcccagaa gcctgtggtc cacctcatca cggggtctgc tccccagagc
1741 ctcggcagca gcgccagcag cagcagcagc tctcactgtt caccaagtcc tacctcatcc
1801 cggggcaccc ccagcgcaga gccctccacc agctggtccc tctgatgggc aggacccagc
1861 ttcccacttg ccactctcct gtcgagagtg aaggaagttg atgcacagaa tttacctcat
1921 ctcacagagc ccacgtcgac gagcaccatt tggccagaca ttgagagttt ggacgtgtcc
1981 gtctgtccag gctccattca ggtcctgctg tactctgggg gcagggagag gctagagggg
2041 caggacagac agcgttgtcc aatcagggat tgtcctggag aactgggtgg gggtctgtgg
2101 gtgtccagct tcctccaggg ttccccagcc acctcccagc tcagggcaca gtgtatcgac
2161 aatctgtcag ccgacgcagg gctggaggcc ctccatttcc ctcccctttt aatttatttc
2221 cctgaccctg ccttctgcca tgaccccagg gccactagtc tcttcccctg tttttaagtc
2281 ccatgtgggg ctgccaggag ccaagagcat gccttcatgc ccttctctgc agagcatggg
2341 atggggccct tccagcccac tttgcctact gttaggttcc tggggtacgg gtccctcaaa
2401 cacaagtctt gaatcagtcc tcagggcccc agatccccct tctaatagtc tgaaggaaga
2461 ggctgtgagg gcagttcagg gccagggccc acagggcatc tgctgatggg aaggcagagc
2521 ctcggggctg cccagccctg gcacctgctt cacacggacc attctctgac cgcccccgcc
2581 aaacctcatg ctccccactt gcccttattg gcctgctttc ccaaaaacag cccactcatc
2641 ctttccccag ccctcttcag ccctccccag tcctccccag ccttcttcag ccttcttcag
2701 ctcagccctc ttctatttct tatggggcca tcttggcctc accatcccca cacgtgccga
2761 tgtcaggttc attgaaatac ctcagatttg taattgttga tgtttgagtc ttcaggaagt
2821 atttgcatct ctgaaatctt ttttatatgt gttttgctga cttttgtttt ttttttattt
2881 taaaattttt atcgtagcac caaagaaatg aaaacagatc acccccaaag ccaagcaagt
2941 gattgggtaa cccggcccct ctggcccttc cctcaagccc agtgaggagg tgggtggagg
3001 catgcagggg agacgactca gggatcgcgg gggcggggag gtggagtgga gaggcccgct
3061 ctcacaccgg gtcgggccct gaaactgtac cagttctgaa gaccgttttc tgccacaccc
3121 ccacccccag ctgaccaggg aggcagagga cacctcccca tcactcagca ttcccagctc
3181 agggcacagg caggctgggg tcctcgctgg ccttgccaga ggttgagccg ccccagggta
3241 tgaggagacg aataactcca cagctcctcc tggaccctgc gcgggagcag gcagctcctg
3301 tgctgtaaag aaaattgatt cgcttgcggc tcacctcagt cgaggaagcc ctggaatgtt
3361 cagcagaaca ccaccactgt gacatggggc tgtggcagtg ggagacaccg cgcgtggcgt
3421 gggtgtgtgt ggcagcgtgg ctcgcattca gtcctgtgta ggagaggaaa gggaatcaaa
3481 agcttgagca caaacagata cctcagcccg gtaagctgca gctctgctca actgcgtctt
3541 ctctcagccc tccacacaca ctcaccccca ctcccacaca catacacaca cacacacaca
3601 taccccatct cccgagggct gacctcctct ggcctcagcc tgcagggtgt gggcagagaa
3661 gggcatctgg gacgtggtgc cagtgaggag cccagttggc tggcactggg cccatttgaa
3721 ggtgtctcag acatttggcc agtatgtctt tctcaggggt ttggtcacaa aggatggact
3781 cttcccaccc agaggatgca gggaaagcac actgtgtctt tccggtcatt ggatcctctc
3841 cctttcccca ggcagctcgc ctggccacac cgttggagtg aaccctcact gccctcaagg
3901 acaacagcag ggtgtcaccc agagcccgat gaggggtgcc agcaggtgcc cccacgagtg
3961 gggccttggc ccaagcagag cttcccctga aggtgccatc agccagggca gctctgtccc
4021 ctcctgctct ccatcttata tgtattctaa ccaggaaaaa tgtgatagca catgggtagc
4081 ctaggcagtg agtaaatacc tcagatgtcc tcctgcagca agtgtctata tgttgtggtt
4141 attttctatc ttacatgttc tcgaatgttt atatttcaat aaacctctac ctcttcgaaa
4201 aaaaaaaaaa aaa
//