LOCUS BC041700 5388 bp mRNA linear HUM 06-JUL-2004
DEFINITION Homo sapiens rabaptin, RAB GTPase binding effector protein 1, mRNA
(cDNA clone MGC:48839 IMAGE:6046320), complete cds.
ACCESSION BC041700
VERSION BC041700.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5388)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5388)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: o Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4759005.
FEATURES Location/Qualifiers
source 1..5388
/db_xref="H-InvDB:HIT000052596"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48839 IMAGE:6046320"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..5388
/gene="RABEP1"
/gene_synonym="RAB5EP"
/gene_synonym="RABPT5"
/db_xref="GeneID:9135"
/db_xref="MIM:603616"
CDS 191..2779
/gene="RABEP1"
/gene_synonym="RAB5EP"
/gene_synonym="RABPT5"
/codon_start=1
/product="RABEP1 protein"
/protein_id="AAH41700.1"
/db_xref="GeneID:9135"
/db_xref="MIM:603616"
/translation="MAQPGPASQPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRA
KFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEA
IDEVKRQWREEVASLQAVMKETVRDYEHQFHLRLEQERTQWAQYRESAEREIADLRRR
LSEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVK
ELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQL
KHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKD
HKKADVEEEIKIPVVCALTQEESSAQLSNEEEHLDSTRGSVHSLDAGLLLPSGDPFSK
SDNDMFKDGLRRAQSTDSLGTSGSLQSKALGYNYKAKSAGNLDESDFGPLVGADSVSE
NFDTASLGSLQMPSGFMLTKDQERAIKAMTPEQEETASLLSSVTQGMESAYVSPSGYR
LVSETEWNLLQKEVHNAGNKLGRRCDMCSNYEKQLQGIQIQEAETRDQVKKLQLMLRQ
ANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDV
QEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQQAEDFILPDTTEALRELVL
KYREDIINVRTAADHVEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIAS
ISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISLEEQLKKETAAKATVEQLMF
EEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTKLTDI
NQLPET"
BASE COUNT 1722 a 1019 c 1264 g 1383 t
ORIGIN
1 ggcggaggtc ggcggtcggg tccgtctctg cccgcggctg tggcggcgcc ggcggatcca
61 gccttagcgg ttcctctctg ggcggcggcg gcggcggctc ggttgacgcc tcctccgcca
121 gctgagcccg cgggagccca ggacgccgct tccccgccca tccccgctcc ccgaggccgg
181 ccgcctggtc atggcgcagc cgggcccggc ttcccagcct gacgtttctc ttcagcaacg
241 ggtagcagaa ttggaaaaaa ttaatgcaga atttttacgt gcacaacagc agcttgaaca
301 agaatttaat caaaagagag caaaatttaa ggagttatat ttggctaaag aggaggatct
361 gaagaggcaa aatgcagtat tacaagctgc acaagatgat ttgggacacc ttcgaaccca
421 gctgtgggaa gctcaagcag agatggagaa tattaaggcg attgccacag tctctgagaa
481 caccaagcaa gaagctatag atgaagtgaa aagacagtgg agagaagaag ttgcttcact
541 tcaggctgtt atgaaagaaa cagttcgtga ctatgagcac cagttccacc ttaggctgga
601 gcaggagcga acacagtggg cacagtatag agaatccgca gagagggaaa tagctgattt
661 aagaagaagg ctgtctgaag gtcaagagga ggaaaattta gaaaatgaaa tgaaaaaggc
721 ccaagaggat gctgagaaac ttcggtccgt tgtgatgcca atggaaaagg aaattgcagc
781 tttgaaggat aaactgacag aggctgaaga caaaattaaa gagctggagg cctcaaaggt
841 taaagaactg aatcattatc tggaagctga gaaatcttgt aggactgatc tagagatgta
901 tgtagctgtt ttgaatactc agaaatctgt tctacaggaa gatgctgaga aactgcggaa
961 agaattgcat gaagtttgcc atctcttgga gcaagagcga caacaacaca accagttaaa
1021 acatacgtgg cagaaggcca atgaccagtt tctggaatct cagcgtttac tgatgagaga
1081 catgcagcga atggagattg tgctaacttc agaacagctc cgacaagttg aagaactgaa
1141 gaagaaagat caggaggatg atgaacaaca aagactcaat aagagaaagg atcacaaaaa
1201 agcagatgtt gaggaagaaa taaaaatacc agtagtgtgt gctttaactc aagaagaatc
1261 ttcagcccag ttatcaaatg aagaggagca tttagacagc acccgtggct cagttcattc
1321 cttagatgca ggcttgctgt tgccatctgg agatcctttc agtaaatcgg acaatgacat
1381 gtttaaagat ggactcagga gagcacagtc tacagacagc ttgggaacct cgggctcatt
1441 gcaatccaaa gctttaggct ataactacaa agcaaaatct gctggaaacc tggacgagtc
1501 agattttgga ccactggtag gagcagattc agtgtctgag aactttgata ctgcatccct
1561 tgggtcactc cagatgccaa gtgggtttat gttaaccaaa gatcaggaaa gagcaatcaa
1621 ggcgatgaca ccagaacaag aagagacagc gtccctcctc tccagcgtta cccagggcat
1681 ggagagtgcc tatgtgtccc ctagtggtta tcgtttagtt agtgaaacag aatggaatct
1741 cttgcagaaa gaggtacata atgctggaaa taaacttggt agacgttgtg atatgtgttc
1801 caattacgaa aaacagttac aaggaattca gattcaggag gctgaaacga gagaccaggt
1861 gaaaaaacta cagctgatgc taaggcaagc taatgaccag ttagagaaga caatgaaaga
1921 taagcaggag ctggaagact tcataaagca aagcagcgaa gattcgagtc accagatctc
1981 tgcactcgtc ctaagagccc aggcctccga gatcttactt gaagagttac agcaggggct
2041 ttcccaggca aagagggatg ttcaggaaca gatggcggtg ctgatgcagt cacgggaaca
2101 ggtttcagaa gagctggtga ggttacagaa agataatgac agtctccagg gaaagcacag
2161 cctgcatgtg tcattacagc aagcagaaga cttcatcctc ccagacacta cagaggcact
2221 gcgggagttg gtattaaaat accgcgagga catcattaat gtgcggacag cagcagacca
2281 cgtagaagaa aagctgaagg ctgagatact tttcctaaaa gagcagatcc aagcagaaca
2341 gtgtttaaaa gaaaatcttg aagaaactct gcaactagaa atagaaaact gcaaggagga
2401 aatagcttct atttctagcc taaaagctga attagaaaga ataaaagtgg aaaaaggaca
2461 gttggagtcc acattaagag agaagtctca acagcttgag agtcttcagg aaataaagat
2521 cagtttggaa gagcagttaa agaaagagac tgctgctaag gctaccgttg aacagctaat
2581 gtttgaagag aagaacaaag ctcagagatt acagacagaa ttagatgtca gtgagcaagt
2641 ccagagagat tttgtaaagc tttcacagac ccttcaggtg cagttagagc ggatccggca
2701 agctgactcc ttggagagaa tccgggcaat tctgaatgat actaaactga cagacattaa
2761 ccagcttcct gagacatgac accctcatgg caggattcta gcctgcactt tgggttttta
2821 actcatcttt agagcaacag taattattat ttaactctta actgaagaaa gagaagtcac
2881 aacaaaagga agactggaga aatgcttact tctagaggga gaagactgtg cggcacagga
2941 aacagcaaac agcggggtga tctgcagccc agagaccttc aaatgcgaac actataaact
3001 ccaggcttga ttccaacagg cgtgggatca gatttggtga tggaaaaagc gctgtttcct
3061 tgcctgcttt ctccaagaca gattttcgga acacatttcc ctaccctaaa gcgacatccc
3121 agtagtgttt ggaattttct gttcatagat attggaagag agaatttgct ttatctgttg
3181 tctagagctc atcagtaaca gtattcagtt agcagacaga agtgtagtat gctgtatgaa
3241 tattttatat taaaatatga aggtttgaga gcaggccatt ggctactgac tgtatttccc
3301 ttgctcagta catttttgtt ttccttttac cattttatct tgctttggag gaccttaaat
3361 gctactgaaa cttacctgag aaccatagga ctgtggcaaa caaaaccaat tcatgaagtg
3421 aattaatgat gaggatctga aaacttggct ggggctatat atactggaag ttgaaggtta
3481 aaggaaaagc acaagaaact ttggaagcac tttttctgca tacttagatg atcttcatgg
3541 gcccacaggt accaggataa agccgaactg gtaccatcta ctcttttgaa gtgttttagt
3601 ctagttattg gatcagtgaa aaacattagt atacgttttt aaataggcta atttttcaac
3661 ttggatcatt aggcttacgt actacttgtt tcaaatgtgt caaatacaaa aatggtaact
3721 aggttgacag atactttgta tttttctttt gaattcagac ctggaatgta agtaagtgac
3781 aatgcttatg gaaagccagt tagttagaat tggaaatctg tcttgtcatt ttacaagcat
3841 tagattcctt tcctgtgtga agaaagcctc agtgaaacag gtctttgcca taactttatg
3901 aagtgctaca gaaagcacaa agaattgatt catgttcatc aatacctgct gagagtactg
3961 tcccaggaat atccagtgga tggattcatc atccaggagg ttcaaaagta agatggtttt
4021 caaatcattt ttgagactgg ttgcataaca gcagggtacc tgaaagagcc ttctgggagt
4081 tagtgaacta ggtagattgt tttgttcaca taacgccacc atcaacttaa agtgaattgt
4141 ctttgttata aatgaggtca ctatggactt accctaaaga tcttctgtac ttctgtcttc
4201 cataggacaa atgataagta ctacatacct catctcttgg gttattattg tagtcttgca
4261 ttcatgatta tgaatttaaa aataaatacc aattatggaa atagtactaa aggcttgccg
4321 cgcatgaaac attaattggt ttaaagtccc tttataaaga gtgctacatg gtttagataa
4381 aggaaacata taactattga gttacagggg attttattaa ttttaaaatg caatcaattt
4441 aaattatgta ggtttaagac tagtcccttg gataagcccc aagcgaattt gtcttcagat
4501 tattaaaatt agtgctgtaa atcagggtgg gcaattcaca gcctttctga actgactgaa
4561 ctagagcttg cagtgaagtg ttctgctgag actgagcacc ttacagatat ttttctccag
4621 aagatggtgc tgggtaataa aatcatcaca attagggaat ggttagtggt ctctactgtg
4681 gcaaatgcca actgttggaa ttcactttat tgtagaaaaa cccaaactga gactcttaag
4741 ttttgtttag caatgtgttt ctggtatgaa acaaactact gtgtcactgt ccaggtagga
4801 aacaattctt tcaactgggt tttcagcata aatgggaact gatgtagaag gcaggattta
4861 gcccttctag gcaaaagaaa agctcagttg ggtttcacga gtgttcctgt gcttatattc
4921 agtctgtgcc tacatgttct catgcatgtc taacctgatt tacctcttac ctgtaaccta
4981 ccttatcatg tggcttttaa ttggcagtca ctcgccattt ctaagcagat atagtactac
5041 ctttcagaac tcacattggc aagtgtaaaa agatgactta aggtgaagtg aggacaaaat
5101 cacattctgc atactaacct atttttttct ccctttaagg tgctaaactt gcacctcatg
5161 tccactcagt aacaagtatt gggacgtaga gcacagcctc actcagctct gaaaggtaat
5221 acagcctgtg aggaagtgag ccagcagtgg cctttgcaat tgtggatctt aagctctgct
5281 ctcagcagat ttcaggtgta accatttgtt aactgtactg aaggtgtgtc ctcaagaaga
5341 aagtgttcaa attaaaaaag ctgctgccaa gtaaaaaaaa aaaaaaaa
//