LOCUS BC041663 3443 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens tumor necrosis factor (ligand) superfamily, member 4,
mRNA (cDNA clone MGC:47852 IMAGE:4510740), complete cds.
ACCESSION BC041663
VERSION BC041663.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3443)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3443)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: b Column: 20.
FEATURES Location/Qualifiers
source 1..3443
/db_xref="H-InvDB:HIT000052586"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47852 IMAGE:4510740"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3443
/gene="TNFSF4"
/gene_synonym="CD134L"
/gene_synonym="CD252"
/gene_synonym="GP34"
/gene_synonym="OX-40L"
/gene_synonym="OX4OL"
/db_xref="GeneID:7292"
/db_xref="HGNC:HGNC:11934"
/db_xref="MIM:603594"
CDS 246..647
/gene="TNFSF4"
/gene_synonym="CD134L"
/gene_synonym="CD252"
/gene_synonym="GP34"
/gene_synonym="OX-40L"
/gene_synonym="OX4OL"
/codon_start=1
/product="TNFSF4 protein"
/protein_id="AAH41663.1"
/db_xref="GeneID:7292"
/db_xref="HGNC:HGNC:11934"
/db_xref="MIM:603594"
/translation="MVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIMKVQNNSVI
INCDGFYLISLKGYFSQEVNISLHYQKDEEPLFQLKKVRSVNSLMVASLTYKDKVYLN
VTTDNTSLDDFHVNGGELILIHQNPGEFCVL"
BASE COUNT 1017 a 661 c 700 g 1065 t
ORIGIN
1 aaaacacagg acacatggct ccattcaagg ctaactgatt gcacaacggc tctgagcagg
61 agagagcaaa aggtgaacca cagttgtaca gcttgctggt ggttggggtc acattggact
121 atcaatatcc aggagatgtt gagaaaaaga ggggatcctt tccaacaagt catccagcaa
181 ctctgggaca gaaggaaagc tgtgggaaga aaagcagggt gctggtttct aggacactaa
241 acctcatggt atcacatcgg tatcctcgaa ttcaaagtat caaagtacaa tttaccgaat
301 ataagaagga gaaaggtttc atcctcactt cccaaaagga ggatgaaatc atgaaggtgc
361 agaacaactc agtcatcatc aactgtgatg ggttttatct catctccctg aagggctact
421 tctcccagga agtcaacatt agccttcatt accagaagga tgaggagccc ctcttccaac
481 tgaagaaggt caggtctgtc aactccttga tggtggcctc tctgacttac aaagacaaag
541 tctacttgaa tgtgaccact gacaatacct ccctggatga cttccatgtg aatggcggag
601 aactgattct tatccatcaa aatcctggtg aattctgtgt cctttgaggg gctgatggca
661 atatctaaaa ccaggcacca gcatgaacac caagctgggg gtggacaggg catggattct
721 tcattgcaag tgaaggagcc tcccagctca gccacgtggg atgtgacaag aagcagatcc
781 tggccctccc gcccccaccc ctcagggata tttaaaactt attttatata ccagttaatc
841 ttatttatcc ttatattttc taaattgcct agccgtcaca ccccaagatt gccttgagcc
901 tactaggcac ctttgtgaga aagaaaaaat agatgcctct tcttcaagat gcattgtttc
961 tattggtcag gcaattgtca taataaactt atgtcattga aaacggtacc tgactaccat
1021 ttgctggaaa tttgacatgt gtgtggcatt atcaaaatga agaggagcaa ggagtgaagg
1081 agtggggtta tgaatctgcc aaaggtggta tgaaccaacc cctggaagcc aaagcggcct
1141 ctccaaggtt aaattgattg cagtttgcat attgcctaaa tttaaacttt ctcatttggt
1201 gggggttcaa aagaagaatc agcttgtgaa aaatcaggac ttgaagagag ccgtctaaga
1261 aataccacgt gctttttttc tttaccattt tgctttccca gcctccaaac atagttaata
1321 gaaatttccc ttcaaagaac tgtctgggga tgtgatgctt tgaaaaatct aatcagtgac
1381 ttaagagaga ttttcttgta tacagggaga gtgagataac ttattgtgaa gggttagctt
1441 tactgtacag gatagcaggg aactggacat ctcagggtaa aagtcagtac ggattttaat
1501 agcctgggga ggaaaacaca ttctttgcca cagacaggca aagcaacaca tgctcatcct
1561 cctgcctatg ctgagatacg cactcagctc catgtcttgt acacacagaa acattgctgg
1621 tttcaagaaa tgaggtgatc ctattatcaa attcaatctg atgtcaaata gcactaagaa
1681 gttattgtgc cttatgaaaa ataatgatct ctgtctagaa ataccataga ccatatatag
1741 tctcacattg ataattgaaa ctagaagggt ctataatcag cctatgccag ggcttcaatg
1801 gaatagtatc cccttatgtt tagttgaaat gtccccttaa cttgatataa tgtgttatgc
1861 ttatggcgct gtggacaatc tgatttttca tgtcaacttt ccagatgatt tgtaacttct
1921 ctgtgccaaa ccttttataa acataaattt ttgagatatg tattttaaaa ttgtagcaca
1981 tgtttccctg acattttcaa tagaggatac aacatcacag aatctttctg gatgattctg
2041 tgttatcaag gaattgtact gtgctacaat tatctctaga atctccagaa aggtggaggg
2101 ctgttcgccc ttacactaaa tggtctcagt tggatttttt tttcctgttt tctatttcct
2161 cttaagtaca ccttcaacta tattcccatc cctctatttt aatctgttat gaaggaaggt
2221 aaataaaaat gctaaataga agaaattgta ggtaaggtaa gaggaatcaa gttctgagtg
2281 gctgccaagg cactcacaga atcataatca tggctaaata tttatggagg gcctactgtg
2341 gaccaggcac tgggctaaat acttacattt acaagaatca ttctgagaca gatattcaat
2401 gatatctggc ttcactactc agaagattgt gtgtgtgttt gtgtgtgtgt gtgtgtgtgt
2461 atttcacttt ttgttattga ccatgttctg caaaattgca gttactcagt gagtgatatc
2521 cgaaaaagta aacgtttatg actataggta atatttaaga aaatgcatgg ttcattttta
2581 agtttggaat ttttatctat atttctcaca gatgtgcagt gcacatgcag gcctaagtat
2641 atgttgtgtg tgttgtttgt ctttgatgtc atggtcccct ctcttaggtg ctcactcgct
2701 ttgggtgcac ctggcctgct cttcccatgt tggcctctgc aaccacacag ggatatttct
2761 gctatgcacc agcctcactc caccttcctt ccatcaaaaa tatgtgtgtg tgtctcagtc
2821 cctgtaagtc atgtccttca cagggagaat taacccttcg atatacatgg cagagttttg
2881 tgggaaaaga attgaatgaa aagtcaggag atcagaattt taaatttgac ttagccacta
2941 actagccatg taaccttggg aaagtcattt cccatttctg ggtcttgctt ttctttctgt
3001 taaatgagag gaatgttaaa tatctaacag tttagaatct tatgcttaca gtgttatctg
3061 tgaatgcaca tattaaatgt ctatgttctt gttgctatga gtcaaggagt gtaaccttct
3121 cctttactat gttgaatgta tttttttctg gacaagctta catcttcctc agccatcttt
3181 gtgagtcctt caagagcagt tatcaattgt tagttagata ttttctattt agagaatgct
3241 taagggattc caatcccgat ccaaatcata atttgttctt aagtatactg ggcaggtccc
3301 ctattttaag tcataatttt gtatttagtg ctttcctggc tctcagagag tattaatatt
3361 gatattaata atatagttaa tagtaatatt gctatttaca tggaaacaaa taaaagatct
3421 cagaattcaa aaaaaaaaaa aaa
//