LOCUS BC041129 2824 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens aryl hydrocarbon receptor nuclear translocator-like,
mRNA (cDNA clone MGC:47515 IMAGE:5753529), complete cds.
ACCESSION BC041129
VERSION BC041129.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2824)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2824)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: k Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42716310.
FEATURES Location/Qualifiers
source 1..2824
/db_xref="H-InvDB:HIT000052515"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47515 IMAGE:5753529"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2824
/gene="ARNTL"
/gene_synonym="BMAL1"
/gene_synonym="BMAL1c"
/gene_synonym="JAP3"
/gene_synonym="MGC47515"
/gene_synonym="MOP3"
/gene_synonym="PASD3"
/gene_synonym="TIC"
/db_xref="GeneID:406"
/db_xref="HGNC:HGNC:701"
/db_xref="MIM:602550"
CDS 384..2261
/gene="ARNTL"
/gene_synonym="BMAL1"
/gene_synonym="BMAL1c"
/gene_synonym="JAP3"
/gene_synonym="MGC47515"
/gene_synonym="MOP3"
/gene_synonym="PASD3"
/gene_synonym="TIC"
/codon_start=1
/product="aryl hydrocarbon receptor nuclear
translocator-like"
/protein_id="AAH41129.2"
/db_xref="GeneID:406"
/db_xref="HGNC:HGNC:701"
/db_xref="MIM:602550"
/translation="MADQRMDISSTISDFMSPGPTDLLSSSLGTSGVDCNRKRKGSST
DYQESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC
NAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTFLSDDELKHLILRAADGFLF
VVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRER
LIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTCSKKKDRK
SFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCLVAIGRLHSHVVPQPVNGEIRV
KSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVL
QTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVLEGGDP
TFPQLTASPHSMDSMLPSGEGGPKRTHPTVPGIPGGTRAGAGKIGRMIAEEIMEIHRI
RGSSPSSCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSSGLLSGQAQENPGYPYS
DSSSILGENPHIGIDMIDNDQGSSSPSNDEAAMAVIMSLLEADAGLGGPVDFSDLPWP
L"
BASE COUNT 849 a 618 c 646 g 711 t
ORIGIN
1 ttagggaagg cagaaagtag gtcagggacg gaggtgcctg tttacccgcg ccggactcac
61 cgccgccgcc gccgcgggat ccgagtgcgg gcgcgggcgc gggcgctccc ggcgagccac
121 ggtggtgctg gctagagtgt atacgtttgg acccaagctt aacttttcca atgtggaatc
181 ctgggccttc attggttccg atgtcatagg aatctacgct agagggcttc ctgtgtgccg
241 ggcactgtgg tttttggaag aagctgaccg cctgaaaaga aattataaaa catgaaaatc
301 gctttgaggt gaccaagtcc agaggcccct aactcctccc aagctggatc tggggtgtaa
361 gaactgtgac ttcagatcat ccaatggcag accagagaat ggacatttct tcaaccatca
421 gtgatttcat gtccccgggc cccaccgacc tgctttccag ctctcttggt accagtggtg
481 tggattgcaa ccgcaaacgg aaaggcagct ccactgacta ccaagaaagc atggacacag
541 acaaagatga ccctcatgga aggttagaat atacagaaca ccaaggaagg ataaaaaatg
601 caagggaagc tcacagtcag attgaaaagc ggcgtcggga taaaatgaac agttttatag
661 atgaattggc ttctttggta ccaacatgca acgcaatgtc caggaaatta gataaactta
721 ctgtgctaag gatggctgtt cagcacatga aaacattaag aggtgccacc aatccataca
781 cagaagcaaa ctacaaacca acttttctat cagacgatga attgaaacac ctcattctca
841 gggcagcaga tggatttttg tttgtcgtag gatgtgaccg agggaagata ctctttgtct
901 cagagtctgt cttcaagatc ctcaactaca gccagaatga tctgattggt cagagtttgt
961 ttgactacct gcatcctaaa gatattgcca aagtcaagga gcagctctcc tcctctgaca
1021 ccgcaccccg ggagcggctc atagatgcaa aaactggact tccagttaaa acagatataa
1081 cccctgggcc atctcgatta tgttctggag cacgacgttc tttcttctgt aggatgaagt
1141 gtaacaggcc ttcagtaaag gttgaagaca aggacttccc ctctacctgc tcaaagaaaa
1201 aagatcgaaa aagcttctgc acaatccaca gcacaggcta tttgaaaagc tggccaccca
1261 caaagatggg gctggatgaa gacaacgaac cagacaatga ggggtgtaac ctcagctgcc
1321 tcgtcgcaat tggacgactg cattctcatg tagttccaca accagtgaac ggggaaatca
1381 gggtgaaatc tatggaatat gtttctcggc acgcgataga tggaaagttt gtttttgtag
1441 accagagggc aacagctatt ttggcatatt taccacaaga acttctaggc acatcgtgtt
1501 atgaatattt tcaccaagat gacataggac atcttgcaga atgtcatagg caagttttac
1561 agacgagaga aaaaattaca actaattgct ataaatttaa aatcaaagat ggttctttta
1621 tcacactacg gagtcgatgg ttcagtttca tgaacccttg gaccaaggaa gtagaatata
1681 ttgtctcaac taacactgtt gttttagcca acgtcctgga aggcggggac ccaaccttcc
1741 cacagctcac agcatccccc cacagcatgg acagcatgct gccctctgga gaaggtggcc
1801 caaagaggac ccaccccact gttccaggga ttccaggggg aacccgggct ggggcaggaa
1861 aaataggccg aatgattgct gaggaaatca tggaaatcca caggataaga gggtcatcgc
1921 cttctagctg tggctccagc ccattgaaca tcacgagtac gcctccccct gatgcctctt
1981 ctccaggagg caagaagatt ttaaatggag ggactccaga cattccttcc agtggcctac
2041 tatcaggcca ggctcaggag aacccaggtt atccatattc tgatagttct tctattcttg
2101 gtgagaaccc ccacataggt atagacatga ttgacaacga ccaaggatca agtagtccca
2161 gtaatgatga ggcagcaatg gctgtcatca tgagcctctt ggaagcagat gctggactgg
2221 gtggccctgt tgactttagt gacttgccat ggccgctgta aacactacat gttgctttgg
2281 caacagctat agtatcaaag tgcattactg gtggagtttt acagtctgtg aagcttactg
2341 gataaggaga gaatagcttt tatgtactga cttcataaaa gccatctcag agccattgat
2401 acaagtcaat cttactatat gtaacttcag acaaagtgga actaagcctg ctccagtgtt
2461 tcctcatcat tgattattgg gctagctgtg gatagcttgc attaattgta tattttggat
2521 tctgtttgtg ttgaattttt taatcattgt gcacagaagc atcattggta gcttttatat
2581 gcaaatggtc atttcagatg tatggtgttt ttacactaca aagaagtccc ccatgtggat
2641 atttcttata ctaattgtat cataaagccg tttattcttc cttgtaagaa tcctttacta
2701 taaatatggg ttaaagtata atgtactaga cagttaaata tttttaataa atgtttccct
2761 tgttctataa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2821 aaaa
//