LOCUS BC040948 2355 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox A11, mRNA (cDNA clone MGC:48802
IMAGE:5587615), complete cds.
ACCESSION BC040948
VERSION BC040948.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2355)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2355)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: h Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24497552.
FEATURES Location/Qualifiers
source 1..2355
/db_xref="H-InvDB:HIT000052466"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48802 IMAGE:5587615"
/tissue_type="Ovary, pooled from 3 adults"
/clone_lib="NIH_MGC_125"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2355
/gene="HOXA11"
/db_xref="GeneID:3207"
/db_xref="HGNC:HGNC:5101"
/db_xref="MIM:142958"
CDS 73..1014
/gene="HOXA11"
/codon_start=1
/product="homeobox A11"
/protein_id="AAH40948.1"
/db_xref="GeneID:3207"
/db_xref="HGNC:HGNC:5101"
/db_xref="MIM:142958"
/translation="MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMT
YSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAAGV
PGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYP
GDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPES
SSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSR
MLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL"
BASE COUNT 616 a 647 c 619 g 473 t
ORIGIN
1 cttcaaagag gcagctgcag tggagaatca tgttaagctc ggctactgcg gagagcccaa
61 ggtagcccaa taatggattt tgatgagcgt ggtccctgct cctctaacat gtatttgcca
121 agttgtactt actacgtctc gggtccagat ttctccagcc tcccttcttt tctgccccag
181 accccgtctt cgcgcccaat gacatactcc tactcctcca acctgcccca ggtccaaccc
241 gtgcgcgaag tgaccttcag agagtacgcc attgagcccg ccactaaatg gcacccccgc
301 ggcaatctgg cccactgcta ctccgcggag gagctcgtgc acagagactg cctgcaggcg
361 cccagcgcgg ccggcgtgcc tggcgacgtg ctggccaaga gctcggccaa cgtctaccac
421 caccccaccc ccgcagtctc gtccaatttc tatagcaccg tgggcaggaa cggcgtcctg
481 ccacaggctt tcgaccagtt tttcgagaca gcctacggca ccccggaaaa cctcgcctcc
541 tccgactacc ccggggacaa gagcgccgag aaggggcccc cggcggccac ggcgacctcc
601 gcggcggcgg cggcggctgc aacgggcgcg ccggcaactt caagttcgga cagcggcggc
661 ggcggcggct gccgggagac ggcggcggca gcagaggaga aagagcggcg gcggcgcccc
721 gagagcagca gcagccccga gtcgtcttcc ggccacactg aggacaaggc cggcggctcc
781 agtggccaac gcacccgcaa aaagcgctgc ccctatacca agtaccagat ccgagagctg
841 gaacgggagt tcttcttcag cgtctacatt aacaaagaga agcgcctgca actgtcccgc
901 atgctcaacc tcactgatcg tcaagtcaaa atctggtttc agaacaggag aatgaaggaa
961 aaaaaaatta acagagaccg tttacagtac tactcagcaa atccactcct ctaagactcc
1021 agcggctgga attgggtggg gggcttcata cacatgagat aatatgcaga ttttgccctt
1081 gacaaagtca agccacatgg tgacttttga aaagaggtgt gcaagagagg gatgcatgga
1141 gatagcccca caggaggtgg tctgggactc tcttgattaa gatctcagtg gttaagattc
1201 ctaataatca ttggattctg agagctgtgc atcagctaga atgacaggtt tgggacccct
1261 ggtggttcac tcttggggcc tgcagagctg cgggctgggt gtggtctcca ctggggattg
1321 ggcccctgcc agaccccctg gagactaacc ccaccacacc ctccctctac tgggagccta
1381 cccaccccca ggacccctga gtaaaaaagc tgtgtgctct ccaagcccag ttcagcttgg
1441 ggacaggggc aggaggaagg ggtaggatta ctaggtgccc agaatgaggc tgctttccaa
1501 agccaatgtg aacagcggct ggacttggag gtagctttga ggtggaagag ggctgcaaat
1561 ccttgtggga aaagaaatct atgattccag gtggcatcag tgtctttcca ctcctcctag
1621 ccacccaccg cactgatcca gccctgagtt cctagccacc gcctcctaca gcccacctgg
1681 cttttctttc taccaaatga gggtcttggt tccagcctgc cactcaggcc caaagcctcg
1741 acacagagtg gactgttccc tgaggtggga gatgtggaaa agccaagagg ctgcagccag
1801 gccactggcc cctgagatct ctgcaggaaa tggctgtgga gtgtggcagt ttggcaaact
1861 ctccaccaca cgtaatgaaa cttggatttg ctcagtgtct ggctgcagag cagtgggcct
1921 ggccagcagg tccccagctt tggctatgag ggccttgagt cccccaaaac accgggttcc
1981 agcaccacac tcagccctca ttggctcttg aactgagctt ggaagcttct ggtgaccttc
2041 caagagcctg agagtgaggt ggaattattt taaaagataa atattatatt atatatatat
2101 atatttccct gaaggaacca aagcgaattt taaaagatgc aatgtagagg ggaaaagaga
2161 tgatgaaaat atttaaaggc cctatctgtt tacagtgttc cgtggttaaa ctcgctcact
2221 gctaagaata tttgaatgta tgcttcatac agggatggtg ttcaaaaaac ttgtaaataa
2281 aggaaccata atcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2341 aaaaaaaaaa aaaaa
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