LOCUS BC040879 2469 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens adhesion molecule with Ig-like domain 1, mRNA (cDNA
clone MGC:50479 IMAGE:5725643), complete cds.
ACCESSION BC040879
VERSION BC040879.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2469)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2469)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 88 Row: i Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 57977278.
FEATURES Location/Qualifiers
source 1..2469
/db_xref="H-InvDB:HIT000052457"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50479 IMAGE:5725643"
/tissue_type="Ovary, pooled from 3 adults"
/clone_lib="NIH_MGC_125"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2469
/gene="AMIGO1"
/gene_synonym="AMIGO"
/db_xref="GeneID:57463"
/db_xref="HGNC:HGNC:20824"
CDS 351..1832
/gene="AMIGO1"
/gene_synonym="AMIGO"
/codon_start=1
/product="adhesion molecule with Ig-like domain 1"
/protein_id="AAH40879.1"
/db_xref="GeneID:57463"
/db_xref="HGNC:HGNC:20824"
/translation="MHPHRDPRGLWLLLPSLSLLLFEVARAGRAVVSCPAACLCASNI
LSCSKQQLPNVPHSLPSYTALLDLSHNNLSRLRAEWTPTRLTQLHSLLLSHNHLNFIS
SEAFSPVPNLRYLDLSSNQLRTLDEFLFSDLQVLEVLLLYNNHIMAVDRCAFDDMAQL
QKLYLSQNQISRFPLELVKEGAKLPKLTLLDLSSNKLKNLPLPDLQKLPAWIKNGLYL
HNNPLNCDCELYQLFSHWQYRQLSSVMDFQEDLYCMNSKKLHNVFNLSFLNCGEYKER
AWEAHLGDTLIIKCDTKQQGMTKVWVTPSNERVLDEVTNGTVSVSKDGSLLFQQVQVE
DGGVYTCYAMGETFNETLSVELKVHNFTLHGHHDTLNTAYTTLVGCILSVVLVLIYLY
LTPCRCWCRGVEKPSSHQGDSLSSSMLSTTPNHDPMAGGDKDDGFDRRVAFLEPAGPG
QGQSGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPIVV"
BASE COUNT 580 a 705 c 678 g 506 t
ORIGIN
1 ccggctcccc gcaccgatcc gcgccaggcc tgcggacctg gaggcagcga ccgcggtcgg
61 tgggctccgg cgggctcagc ggtcgaggcg gtggcagggt gagcggagcg gggccccgca
121 agtccccggg aggcgacggt gccgggcgcg ggcccctgcg taaggtgggc gcagtgacag
181 gccggccggt gaggcgccgc cgggagaggc cgcgacggag ctcccagacc ggccatgggc
241 tgagacacgt cctcgccgag cagtgaccct tccgtacccc accagaacat gcccgggtga
301 cctcctccca gatcttcctt gtggccttcc tcgcccactc cagtgacact atgcaccccc
361 accgtgaccc gagaggcctc tggctcctgc tgccgtcctt gtccctgctg ctttttgagg
421 tggccagagc tggccgagcc gtggttagct gtcctgccgc ctgcttgtgc gccagcaaca
481 tcctcagctg ctccaagcag cagctgccca atgtgcccca ttccctgccc agttacacag
541 cactactgga cctcagtcac aacaacctga gccgcctgcg ggccgagtgg acccccacgc
601 gcctgaccca actgcactcc ctgctgctga gccacaacca cctgaacttc atctcctctg
661 aggccttttc cccggtaccc aacctgcgct acctggacct ctcctccaac cagctgcgta
721 cactggatga gttcctgttc agtgacctgc aagtactgga ggtgctgctg ctctacaata
781 accacatcat ggcggtggac cggtgcgcct tcgatgacat ggcccagctg cagaaactct
841 acttgagcca gaaccagatc tctcgcttcc ctctggaact ggtcaaggaa ggagccaagc
901 tacccaaact aacgctcctg gatctctctt ctaacaagct gaagaacttg ccattgcctg
961 acctgcagaa gctgccggcc tggatcaaga atgggctgta cctacataac aaccccctga
1021 actgcgactg tgagctctac cagctgtttt cacactggca gtatcggcag ctgagctccg
1081 tgatggactt tcaagaggat ctgtactgca tgaactccaa gaagctgcac aatgtcttca
1141 acctgagttt cctcaactgt ggcgagtaca aggagcgtgc ctgggaggcc cacctgggtg
1201 acaccttgat catcaagtgt gacaccaagc agcaagggat gaccaaggtg tgggtgacac
1261 caagtaatga acgggtgcta gatgaggtga ccaatggcac agtgagtgtg tctaaggatg
1321 gcagtcttct tttccagcag gtgcaggtcg aggacggtgg tgtgtatacc tgctatgcca
1381 tgggagagac tttcaatgag acactgtctg tggaattgaa agtgcacaat ttcaccttgc
1441 acggacacca tgacaccctc aacacagcct ataccaccct agtgggctgt atccttagtg
1501 tggtcctggt cctcatatac ctatacctca ccccttgccg ctgctggtgc cggggtgtag
1561 agaagccttc cagccatcaa ggagacagcc tcagctcttc catgcttagt accacaccca
1621 accatgatcc tatggctggt ggggacaaag atgatggttt tgaccggcgg gtggctttcc
1681 tggaacctgc tggacctggg cagggtcaaa gcggcaagct caagccaggc aacaccctgc
1741 cagtgcctga ggccacaggc aagggccaac ggaggatgtc ggatccagaa tcagtcagct
1801 cggtcttctc tgatacgccc attgtggtgt gagcaggatg ggttggtggg gagattctgc
1861 cccaggagag gtaatgcacc cctgaaggat atgaggggat ggaagagagg gctggctgcc
1921 caagggaatg gattcctcct gacctcaagg gaattggtcc caggtacaac agagagcaag
1981 accccaaaca gggcgtggct gccacgattt tcaaatgggg gtatattaat cctcaggcaa
2041 atgctacacc cgtacccaaa gccctgccaa ttctcagtgt ggtagaggaa gagaagcatg
2101 tctgagttgg atgggaatga ggaaggagtg aggggaagaa cagattccct aaactttcat
2161 gaggtcatcc ctagctcctt aagagaaaaa catttagaaa aaaaaatttt ttctatctct
2221 gcccacccac acctgtgatg ttgtgtgtgt tgggggagct tccacaggag ccacactggg
2281 gaaaagctgt agtatcttct ttgtttagca agtcaaactt cacagctggg gaagttgaaa
2341 acctttggaa aatgagtcag gaaaaggctg agacctcaat cggtaacaat tccccaaagc
2401 tgttgtaaga ctttgcatta aagccttcct ttttcctgaa aaaaaaaaaa aaaaaaaaaa
2461 aaaaaaaaa
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