LOCUS BC040679 3326 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens RAB15, member RAS onocogene family, mRNA (cDNA clone
MGC:42319 IMAGE:4817835), complete cds.
ACCESSION BC040679
VERSION BC040679.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3326)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3326)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC040679.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 70 Row: p Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38371738.
FEATURES Location/Qualifiers
source 1..3326
/db_xref="H-InvDB:HIT000096328"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:42319 IMAGE:4817835"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3326
/gene="RAB15"
/db_xref="GeneID:376267"
/db_xref="HGNC:HGNC:20150"
CDS 5..631
/gene="RAB15"
/codon_start=1
/product="RAB15, member RAS onocogene family"
/protein_id="AAH40679.2"
/db_xref="GeneID:376267"
/db_xref="HGNC:HGNC:20150"
/translation="MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVD
FKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKW
VSDVDEVGDATSLPGCGEGASPGKARRGPDGKANASRKLCLPQPWMKTSGTHQKASRR
SLLGIRLMRSRNGRWEESKGSSWRRSMAWTSMKQVPAPTSTLKSHSRV"
BASE COUNT 801 a 899 c 908 g 718 t
ORIGIN
1 agtcatggcg aagcagtacg atgtgctgtt ccggctgctg ctgatcgggg actccggggt
61 gggcaagacc tgcctgctgt gccgcttcac cgacaacgag ttccactcct cgcacatctc
121 caccatcggt gttgacttta agatgaagac catagaggta gacggcatca aagtgcggat
181 acagatctgg gacactgcag ggcaggagag ataccagacc atcacaaagc agtactatcg
241 gcgggcccag gggatatttt tggtctatga cattagcagc gagcgctctt accagcacat
301 catgaagtgg gtcagtgacg tggatgaggt aggagatgcc acctcactgc cggggtgtgg
361 agagggtgcc tcaccgggga aggcaaggcg agggccagat gggaaggcaa atgcttccag
421 gaagctttgc cttccacagc cctggatgaa gacctctggt acgcaccaga aggcgtccag
481 aagatcctta ttgggaataa ggctgatgag gagcagaaac ggcaggtggg aagagagcaa
541 gggcagcagc tggcgaagga gtatggcatg gacttctatg aaacaagtgc ctgcaccaac
601 ctcaacatta aagagtcatt cacgcgtctg acagagctgg tgctgcaggc ccataggaag
661 gagctggaag gcctccggat gcgtgccagc aatgagttgg cactggcaga gctggaggag
721 gaggagggca aacccgaggg cccagcgaac tcttcgaaaa cctgctggtg ctgagtcctg
781 tgtggggcac cccacacgac acccctcttc cctcaggagg cccgtgggca gacaggggag
841 ccggggcttt gccctgctgc tgtcctctcg tgtgatgacc ctattgagta tcagtagcca
901 ctactccccc tgcctggccc tgagagcggc tctgctgtca tctcaagcag cccctgtccc
961 cagcccgtcc accctggagt ggtcttcttc agcctgtttc cccagccaca ggcctgctac
1021 gacccccacg atgtgccgca agcactgtct caccatcccg cacccaccag acaacagcca
1081 gggctggagt ccaggccact ttcagctgct cctttctccg tgcatcgtgt ctcttctctg
1141 ctttttctct cttcccccac ttctctttct ctgacccctc ccctccggtg cgtttcgtat
1201 caagctcctc aaaccccgtc ccccgtgtgt cctgctgtgt gcagctcgct ctttccttcc
1261 ttcctaagct atccaagggg atggacccag gctcgtgggg aggttccacc cttggatcca
1321 ggaagaaccc tccaccctgc ctcgtgggtg ggccaaaggc tacagggtgc ttcttcctct
1381 tcccccaccc ccactgtccc tcatgtgcca tgggcctgcc tccccagtga cctgcgaaag
1441 tggagcatcg aggtaggagg gaaacggcaa ccagggagtc ctcgagcctg gggctgccct
1501 acctctaccc attccccgac cagagctttg cccttgcttg gctgccagcc tgcctctttg
1561 gggaactgag ctcagaggca ggtgcttcag agaaggaaac aaaatgaggg gtggcaggga
1621 taaaaagtca cctccattct ctacctccca tgcagcatga acacaatttc tctccacctg
1681 gctcccaaat ttaaagatgt ggaccaaggc ctgtgggtac tccaggggca aggagagccc
1741 tggggtcagt gacactgtca ggccaaccat gcactccaca aaggggagca tttggaaatg
1801 aaggactggc tcctatgtat caggttaaga gcaagggaga gctggccagg gacagcagtt
1861 tgcacagcag aggggaatgt agcaacagca gggcctccta ggccccatct tccatttctt
1921 aggtaagaag agcatttcct cagactccca ggcggaggac tgagcctagc cttcagcaac
1981 caaggttctc ctgggaccca aagtttatgg gagaagggca aagacttcat gggaagagag
2041 aaggaaggcc ctgggtagaa acgcttggtg ctgttctctt tggcctttaa gacaaagcgc
2101 tcatcttgcc ctctacctcc tgataggctt gagggtttgc caaccacact gtggctacag
2161 gtggagggaa gaggactcct tcctccagag tgctatgttc aggaagtttc tttaaccgca
2221 tatggcccaa gagtagctcg taggaggccc tttaaagacg gaacaagtaa tttaccagtt
2281 ctactggggt tcctgcccac cgtcccaagg tgggcgaggc ctaggaagag ggtcattctt
2341 aagccacaca ttagctgcac tgcgtggctg cagccaaaac aaagaactgg gtgttgagta
2401 ttcatcaact aagaaccaaa atccagggca ctcatatgtg aaggataaga acctcacttc
2461 cttactcctc caaaaagaag tggggaaaga accatcaaac ctttcctcct gacttaccaa
2521 accaggaaaa cagcaggaga gggtggctca ggacttaggg acagggtata gcttagatgg
2581 tggaaagcaa aggagagcag gaagttgtaa atcactggct aatgagaaaa ggagacagct
2641 aactctagga tgaagctgtg actaggctgg agttgcttcc ttgaagatgg gactccttgg
2701 gtatcaagac ctatgccaca tcacactggg gctagggaag taggtgatgc cagccctcaa
2761 gtctgtcttc agccagggac ttgagaagtt atattgggca gtggctccaa tctgtggacc
2821 agtatttcag ctttccctga agatcaggca gggtgccatt cattgtcttt ctctcctagc
2881 cccctcagga aagaaggact atatttgtac tgtaccctag gggttctgga agggaaaaca
2941 tggaatcagg attctataga ctgataggcc ctatccacaa gggccatgac tgggaaaagg
3001 tatgggagca gaaggagaat tgggatttta gggtgcagct acgctcaccc taaacttttg
3061 gtggcctggg gcatgtcttg aggcccagac tgttaaccag gctctgctgg cctgtttact
3121 cgtcaccacc tctgcacctg ctgtcttgag actccatcca gccccaggca cgccacctgc
3181 tcctgagcct ccactatctc cctgtgacgg gtgaacttcg tgtactgtgt ctcgggtcca
3241 tatatgaatt gtgagcaggg ttcatctatt ttaaacacag atgtttacaa aataaagatt
3301 atttcaaacc aaaaaaaaaa aaaaaa
//