LOCUS BC040559 2349 bp mRNA linear HUM 09-SEP-2005
DEFINITION Homo sapiens lymphoid enhancer-binding factor 1, mRNA (cDNA clone
MGC:41818 IMAGE:5269696), complete cds.
ACCESSION BC040559
VERSION BC040559.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2349)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2349)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 74 Row: i Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923451.
FEATURES Location/Qualifiers
source 1..2349
/db_xref="H-InvDB:HIT000096221"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41818 IMAGE:5269696"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2349
/gene="LEF1"
/gene_synonym="TCF1ALPHA"
/db_xref="GeneID:51176"
/db_xref="MIM:153245"
CDS 23..1183
/gene="LEF1"
/gene_synonym="TCF1ALPHA"
/codon_start=1
/product="LEF1 protein"
/protein_id="AAH40559.1"
/db_xref="GeneID:51176"
/db_xref="MIM:153245"
/translation="MPQLSGGGGGGGGDPELCATDEMIPFKDEGDPQKEKIFAEISHP
EEEGDLADIKSSLVNESEIIPASNGHEVARQAQTSQEPYHDKAREHPDDGKHPDGGLY
NKGPSYSSYSGYIMMPNMNNDPYMSNGSLSPPIPRTSNKVPVVQPSHAVHPLTPLITY
SDEHFSPGSHPSHIPSDVNSKQGMSRHPPAPDIPTFYPLSPGGVGQITPPLGWFSHHM
IPGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLN
AFMLYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQL
YPGWSARDNYGKKKKRKREKLQESASGGKRSSFPTCKAKAATPGPLLEMEAC"
BASE COUNT 689 a 564 c 471 g 625 t
ORIGIN
1 cggtgattac agagccgccg ggatgcccca actctccgga ggaggtggcg gcggcggggg
61 ggacccggaa ctctgcgcca cggacgagat gatccccttc aaggacgagg gcgatcctca
121 gaaggaaaag atcttcgccg agatcagtca tcccgaagag gaaggcgatt tagctgacat
181 caagtcttcc ttggtgaacg agtctgaaat catcccggcc agcaacggac acgaggtggc
241 cagacaagca caaacctctc aggagcccta ccacgacaag gccagagaac accccgatga
301 cggaaagcat ccagatggag gcctctacaa caagggaccc tcctactcga gttattccgg
361 gtacataatg atgccaaata tgaataacga cccatacatg tcaaatggat ctctttctcc
421 acccatcccg agaacatcaa ataaagtgcc cgtggtgcag ccatcccatg cggtccatcc
481 tctcaccccc ctcatcactt acagtgacga gcacttttct ccaggatcac acccgtcaca
541 catcccatca gatgtcaact ccaaacaagg catgtccaga catcctccag ctcctgatat
601 ccctactttt tatcccttgt ctccgggtgg tgttggacag atcaccccac ctcttggctg
661 gttttcccat catatgattc ccggtcctcc tggtccccac acaactggca tccctcatcc
721 agctattgta acacctcagg tcaaacagga acatccccac actgacagtg acctaatgca
781 cgtgaagcct cagcatgaac agagaaagga gcaggagcca aaaagacctc acattaagaa
841 gcctctgaat gcttttatgt tatacatgaa agaaatgaga gcgaatgtcg ttgctgagtg
901 tactctaaaa gaaagtgcag ctatcaacca gattcttggc agaaggtggc atgccctctc
961 ccgtgaagag caggctaaat attatgaatt agcacggaaa gaaagacagc tacatatgca
1021 gctttatcca ggctggtctg caagagacaa ttatggtaag aaaaagaaga ggaagagaga
1081 gaaactacag gaatctgcat caggtggaaa acgaagctca ttcccaacgt gcaaagccaa
1141 ggcagcgacc ccaggacctc ttctggagat ggaagcttgt tgaaaaccca gactgtctcc
1201 acggcctgcc cagtcgaccc caaaggaaca ctgacatcaa ttttaccctg aggtcactgc
1261 tagagacgct gatccataaa gacaatcact gccaacccct ctttcgtcta ctgcaagagc
1321 caagttccaa aataaagcat aaaaaggttt tttaaaagga aatgtaaaag cacatgagaa
1381 tgctagcagg ctgtggggca gctgagcagc ttttctcccc ccatatctgc gtgcacttcc
1441 cagagcatct tgcatccaaa cctgtaacct ttcggcaagg acggtaactt ggctgcattt
1501 gcctgtcatg cgcaactgga gccagcaacc agcacatcca tcagcacccc agtggaggag
1561 ttcatggaag agttccctct ttgtttctgc ttcatttttc tttcttttct tttctcctaa
1621 agcttttatt taacagtgca aaaggattgt ttttttttgc ttttttaaac ttgaattttt
1681 tttaatttac actttttagt tttaattttc ttgtatattt tgctagctat gagcttttaa
1741 ataaaattga aagttctgga aaagtttgaa ataatgacat aaaaagaagc cttctttttc
1801 tgagacagct tgtctggtaa gtggcttctc tgtgaattgc ctgtaacaca tagtggcttc
1861 tccgcccttg taaggtgttc agtagagcta aataaatgta atagccaaac ccactctgtt
1921 ggtagcaatt ggcagcccta tttcagttta ttttttcttc tgttttcttc ttttcttttt
1981 ttaaacagta aaccttaaca gatgcgttca gcagactggt ttgcagtgaa ttttcatttc
2041 tttccttatc acccccttgt tgtaaaaagc ccagcacttg aattgttatt actttaaatg
2101 ttctgtattt gtatctgttt ttattagcca attagtggga ttttatgcca gttgttaaaa
2161 tgagcattga tgtacccatt ttttaaaaaa gcaaggcaca gcctttgccc aaaactgtca
2221 tcctaacgtt tgtcattcca gtttgagtta atgtgctgag cattttttta aaagaagctt
2281 tgtaataaaa catttttaaa aattgtcaaa aaaaaaaaaa aaaaaaaaaa aagaaaaaaa
2341 aaaaaaaaa
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