LOCUS BC040321 2411 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens LIM homeobox 8, mRNA (cDNA clone MGC:43046
IMAGE:4839343), complete cds.
ACCESSION BC040321
VERSION BC040321.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2411)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2411)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 72 Row: p Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50083286.
FEATURES Location/Qualifiers
source 1..2411
/db_xref="H-InvDB:HIT000096123"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43046 IMAGE:4839343"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2411
/gene="LHX8"
/gene_synonym="Lhx7"
/db_xref="GeneID:431707"
/db_xref="HGNC:HGNC:28838"
CDS 665..1735
/gene="LHX8"
/gene_synonym="Lhx7"
/codon_start=1
/product="LIM homeobox 8"
/protein_id="AAH40321.1"
/db_xref="GeneID:431707"
/db_xref="HGNC:HGNC:28838"
/translation="MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDE
DSCSSSAPLSPSSSPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSC
SVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLA
CFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQD
VNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNC
RARHKKHVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHS
PTTLGLQPLLPHSMTQLPISHT"
BASE COUNT 668 a 550 c 566 g 627 t
ORIGIN
1 agcggcaaga ggctagcggc tggaccactt gtgctggagt ggtaaagaac tatcatgaat
61 ccatttactg aaagtgtcca tttctgaact caccctaaag aggacaaaca ccgcaaagta
121 gttaaaagtc aggcattcgc gtcggacgtc tgggtttgaa ttctgccctg gcttgactgg
181 aaacgcttcc cctatttctt ccgtagcgga ccgggagagc ttactggcgc tctgcgaacc
241 ggctggaaag aaacaccgag tcactcgtac agactcttgg tcgcagaact tggctttccg
301 ctattggtcc tccagaaccg cttgaaacaa ctggccccag ctggcgcatc agaccgcagt
361 gaggaatgcc gcggggcggg tggcgaaggc agggtctgcc cgccagtgga ttcccgggtg
421 tcccgcgtgg agcaggcttg cccagctggg aagcccatca aacctcagtc ttggcccaca
481 gtgggagaga gaccagtggg tcccagacgg aggccatcgc ccgcttttgg cgacctccac
541 tggcgtgaat aaaagcaccc ctctcttacc ctcagaaact gtgggtagca aggtataaaa
601 cggagtctgg gaccggtaag tcccaaggtg agcccgtata cagctctgcc atctctgagg
661 ggttatgcag attctgagca ggtgtcaggg gctcatgtca gaggagtgcg ggcggactac
721 agccctggcg gccgggagga ctcgcaaagg cgccggggaa gagggactgg tgagccccga
781 gggagcgggg gacgaggact cgtgctcctc ctcggccccg ctgtccccgt cgtcctcgcc
841 ccggtccatg gcctcgggct ccggctgccc tcctggcaag tgtgtgtgca acagttgcgg
901 cctggagatc gtggacaaat accttctcaa ggtgaatgac ctatgctggc atgtccggtg
961 tctctcctgc agtgtttgca gaacctccct aggaaggcac accagctgtt atattaaaga
1021 caaagacatt ttctgcaaac ttgattattt cagaaggtat ggaactcgct gctctcgatg
1081 tgggagacac atccattcta ctgactgggt ccggagagcc aaggggaatg tctatcactt
1141 ggcatgcttt gcctgctttt cctgcaaaag gcaactttcc acaggagagg agtttgcttt
1201 ggtggaagag aaagtcctct gcagagtaca ttatgactgc atgctggata atttaaaaag
1261 agaagtagaa aatgggaatg ggattagtgt ggaaggtgcc ctcctcacag agcaagatgt
1321 taaccatcca aaaccagcaa aaagagctcg gaccagcttt acagcagatc agcttcaggt
1381 tatgcaagca caatttgctc aggacaacaa cccagatgca cagacactcc agaaattggc
1441 agaaaggaca ggcttgagca gacgtgtgat acaggtgtgg tttcagaatt gtagagcacg
1501 ccacaagaaa cacgtcagtc ctaatcactc atcctccacc ccagtcacag cagccccacc
1561 ctccaggctg tctccaccca tgttagaaga aatggcttat tctgcctacg tgccccaaga
1621 tggaacgatg ttaactgcgc tgcatagtta tatggatgct cattcaccaa caactcttgg
1681 actccagccc ttgttacccc attcaatgac acaactgcca ataagtcata cctaattctt
1741 ttttcaggga tagacttgat taaggatata aatttgtcat ttattatgta taaaatacca
1801 ttgaaaagat attactgtta attttttatt taacacctaa agcatttcca acatcacttt
1861 gctgcccagg tatgtatcta tagttggcct gcaagacact tttattaatt cttcattttt
1921 tgtaaaactt atgtttacaa gaagaaaaca aatcaaaaca ttttttgtat tgtctggaaa
1981 tagttcactc tagtgtgtat ctgttaattt atttgtcatc aaaagagcac tttgcctaaa
2041 agaaaggact gacaagtgtg caaaatgttt acaatctttt gtgaaattgt agtttatcat
2101 tagtttgtat ctgtaagtta ttgtaataaa tattacctgt attttttgtt atatacaact
2161 ttatactttg aagcttgtat ctgtgaattt gcaactgaaa tttattttgc caatgttttc
2221 tgaatgaact gaataaagct tctgttgtag catgccatgc aaacacatta ttgtgtttgt
2281 ggttgatgaa ttatggctgt aaataacact atagtttaat aagcccacca ttctgagttt
2341 attaaacatt ttccattctt gtgaaaattt caaaaaaaaa aaaaaaaaaa aaagaaaaaa
2401 aaaaaaaaaa a
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