LOCUS BC040143 3297 bp mRNA linear HUM 02-NOV-2004
DEFINITION Homo sapiens RAB5B, member RAS oncogene family, mRNA (cDNA clone
IMAGE:6046989), partial cds.
ACCESSION BC040143
VERSION BC040143.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3297)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3297)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: o Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33943097.
FEATURES Location/Qualifiers
source 1..3297
/db_xref="H-InvDB:HIT000096019"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6046989"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3297
/gene="RAB5B"
/db_xref="GeneID:5869"
/db_xref="MIM:179514"
CDS <1..806
/gene="RAB5B"
/codon_start=3
/product="RAB5B protein"
/protein_id="AAH40143.1"
/db_xref="GeneID:5869"
/db_xref="MIM:179514"
/translation="LSCSCLSVRHRLGADGGDGAPGVLKPGNPLPFPLPPLQYPPPST
LSHSDNLAMTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQE
STIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETF
ARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKT
AMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN"
BASE COUNT 775 a 854 c 743 g 925 t
ORIGIN
1 ggttgagctg cagctgtttg tctgttcgac acaggcttgg ggccgacggg ggagacggag
61 ccccaggagt gttgaagcct ggaaatcccc tccccttccc cctcccccct ttacagtatc
121 cccctccctc caccctttcc cattctgata atctggccat gactagcaga agcacagcta
181 ggcccaatgg gcaaccccag gccagcaaaa tttgccagtt caaattggtc ctgctgggag
241 aatctgcagt gggaaagtca agcctggtat tacgttttgt caaagggcag ttccatgagt
301 accaggagag caccattgga gcggccttcc tcacccagtc cgtttgtcta gatgacacaa
361 cagtgaagtt tgagatctgg gacacagctg ggcaggagcg atatcacagc ttagccccca
421 tgtactacag gggtgcccaa gctgcaatcg tggtttacga cattactaat caggaaacct
481 ttgcccgagc aaagacatgg gtgaaggaac tacagcgaca ggccagtcct agcatcgtta
541 ttgccctggc agggaacaaa gctgacctgg ccaacaaacg tatggtggag tatgaagagg
601 cccaggcata tgcagatgac aacagcttat tgttcatgga gacttcagcc aagacagcta
661 tgaacgtgaa tgatctcttc ctggcaatag ctaagaagtt gccaaagagt gaaccccaga
721 atctgggagg tgcagcaggc cgaagccggg gtgtggatct ccatgaacag tcccagcaga
781 acaagagcca gtgttgtagc aactgagggg gtggctagca gcaaacaagt atggagctag
841 cacaagagct aagaaataac ctccatccct acccctcagc acacaacccc tacggtaaca
901 gcacactgag ccctggctcc caagggctgc ctcctgacag ctccgtcatg gcacttttta
961 acgcttcagc aacaaacacc aggcagctgt tgccactggc ctcctacccc ctactctggg
1021 gcttgggggt caactccccc caggacttac cttccaaaac aaactttctt cactttgtat
1081 tataggtaca agacagcgac ttacgtatct tttctcctcc tccctagtgt tcctccccat
1141 tttttcagaa aacacttctg actcctgtcc cttccccttc tgcttttggt cagtccctgt
1201 tcttgagcct cttttctcct ctccccagga tgcagaaagt ggtgaaccca ggaactgagg
1261 aaggaggttt ccagttcatt tacattaagg gccctggggg agaataaagc tcagagcagg
1321 agggagtaag gaaacatttc ctttttgttt ttatttggtt ggagtttctc atatttgaaa
1381 acattgcggt atccatgatt tggccttgtg gagggtgttc ctaggtagag gtgagaatgg
1441 ggaggcaaga tctcaggcac caggcaggag gtgccttgta agctaactgg gcggaggtgg
1501 aggtgcagtg tcaactgtgg ctctgtaact cttcaaaggc ccagtttccc ctcacgcagc
1561 ctcttaggta gcgtttcccc taatcgtggg ggttggaccc cagagtcttc caaagaattt
1621 tcactggttg cctgcatctt tggctctgct gtgatctgat tggaggaggg acagtttctg
1681 gtacccatcc tctgatttat acatatgcat tttttcccct ctggccttta gatggcctca
1741 gccccagcca ccatataccc ctgcagtttg cactttaatt gatggtagtt cagttggggt
1801 acttgtttta tggaagtttt gattgattta cttgccctcc caccttcttt ttaattcaat
1861 gaaatctgag gttaatgcga ggttcgagga gaggttatag ataaaactac cagtggcagc
1921 tactcaagtc ctatctccac tgttagcttc ctccaactct aattattaac ctatattctt
1981 gccaagctaa ctattgacta taggtttgcc tttcctggag aattaattga gcaattgagg
2041 agtgtctcag gatagcacag gccaaggtag gggagtaaaa aggaggtcag gcaaaaggga
2101 ggagttttct gtcctttccc aggtttcaca ctcaatttga tatccattac catgtctttt
2161 ctacttcctt gtaaataggt atgatcttta ttcccactgt acagtctgtt ctatcctctg
2221 cctcccatca ggccctgttt ctttgttcct ttgttaatat cttgaattta gtccctccat
2281 ccttaatccc cccatccctc cccatcatgc aaccagtggt ttaatccatg taccaatagg
2341 ggctagtacc acagaggcct cctgtggtgc cctcgtatca taccacctgt tcctgtggag
2401 agggaatgac cggcactgaa ggtaccttac aactggctca tattatcaga ggaccttggt
2461 cctttctaaa tctctagtct ctcttcatat ccttcatcag gtgttttaag atgtctctga
2521 gaagccatca aggcaaaaga gaactttaag ttccttgttc cagcccggag ttttgggaaa
2581 gaaagaaagg aaaggtcaca gtgacctagg attggaacct tcctgccctt ttggcttgca
2641 gactgccttc tatcccagaa cagctgagaa atctatgaag ctgagattct gaaggaccca
2701 gcttaggttc ttccacttag gcctcaattc ccttcctttt ccaggggcag ccttagttcc
2761 catggccctg aaacacacac atttccccct tcctttccca gaagccactg gccccccata
2821 gcacccagtg catccttttt acaagtggaa gaactaggat ggctttccaa agtcttctag
2881 aaatgaagtt ctttctctgt gcagctttcc cccttggagc aggagtgaag atgtttcatt
2941 atcttgggcc tgggaaacca cttccccagg cttctccctc cccccacccc cataggaaca
3001 ggatttggcc ttagcttctg ggcctatcgg ctgccttccc tctacttcct accacctctt
3061 ctgccttcct ttgagctctg ttgggcttgg ggatcttagt tttcttttgt ttatttccca
3121 gctcattttt ttcttctggt cagttttttt aagggggggt gttgtggttt tttgtttttg
3181 ttttgcttct gagaaagcat ttgcctttct tcctctccca acataacaat cgtggtaaca
3241 gaatgcgact gctgatttac cgatgtattt aatgtaagta aaaaaaaaaa aaaaaaa
//