LOCUS BC040114 2948 bp mRNA linear HUM 30-DEC-2006
DEFINITION Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:48686 IMAGE:5755265), complete cds.
ACCESSION BC040114
VERSION BC040114.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2948)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2948)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: l Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18379339.
FEATURES Location/Qualifiers
source 1..2948
/db_xref="H-InvDB:HIT000052323_07"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48686 IMAGE:5755265"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2948
/gene="VPS52"
/gene_synonym="ARE1"
/gene_synonym="dJ1033B10.5"
/gene_synonym="DKFZp547I194"
/gene_synonym="RP5-1033B10"
/gene_synonym="SAC2"
/db_xref="GeneID:6293"
/db_xref="HGNC:HGNC:10518"
/db_xref="MIM:603443"
CDS 172..2343
/gene="VPS52"
/gene_synonym="ARE1"
/gene_synonym="dJ1033B10.5"
/gene_synonym="DKFZp547I194"
/gene_synonym="RP5-1033B10"
/gene_synonym="SAC2"
/codon_start=1
/product="vacuolar protein sorting 52 homolog (S.
cerevisiae)"
/protein_id="AAH40114.2"
/db_xref="GeneID:6293"
/db_xref="HGNC:HGNC:10518"
/db_xref="MIM:603443"
/translation="MAAAATMAAAARELVLRAGTSDMEEEEGPLAGGPGLQEPLQLGE
LDITSDEFILDEVDVHIQANLEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDY
IQESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRN
RQAVRGKLGELVDGLVVPSALVTAILEAPVTEPRFLEQLQELDAKAAAVREQEARGTA
ACADVRGVLDRLRVKAVTKIREFILQKIYSFRKPMTNYQIPQTALLKYRFFYQFLLGN
ERATAKEIRDEYVETLSKIYLSYYRSYLGRLMKVQYEEVAEKDDLMGVEDTAKKGFFS
KPSLRSRNTIFTLGTRGSVISPTELEAPILVPHTAQRGEQRYPFEALFRSQHYALLDN
SCREYLFICEFFVVSGPAAHDLFHAVMGRTLSMTLKHLDSYLADCYDAIAVFLCIHIV
LRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVRSTDPQRLGGLDTRPHY
ITRRYAEFSSALVSINQTIPNERTMQLLGQLQVEVENFVLRVAAEFSSRKEQLVFLIN
NYDMMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVKEAEALIE
RGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVMRSFTNFRNGTSIIQGALTQLI
QLYHRFHRVLSQPQLRALPARAELINIHHLMVELKKHKPNF"
BASE COUNT 714 a 763 c 764 g 707 t
ORIGIN
1 ttgcagttgg gtgaagtggt tagagctgaa aggggacagc tggagtcaaa caacttaact
61 caaatatctg ggaacgattt cgcgctgagg aagacccttt gggacttgta gctccactcc
121 ggggaacgga ctcgccggga ctgacagttg ccggaagtga ggctgcgggg aatggccgcc
181 gctgcgacca tggcggctgc ggcccgggaa ctggtgttgc gggctgggac ctcagatatg
241 gaggaggaag agggcccgct ggcgggtggt cctgggctcc aggaaccact gcaacttggg
301 gagttggata tcacttctga tgaattcatc ctggatgaag tggatgttca cattcaggca
361 aatctggagg atgagttagt aaaggaagct cttaaaacgg gtgtagatct ccgtcactat
421 tcaaagcaag ttgagctgga gctacagcag attgaacaga aatccattcg ggattatatt
481 caagagagtg agaatatagc atctctacac aaccagatca cagcctgtga tgctgtcctg
541 gagcgaatgg agcagatgtt gggagctttt cagagtgacc tcagctccat cagctctgag
601 atccggacac tgcaggaaca gtcaggagcc atgaacattc gacttcgaaa tcgccaggca
661 gttcggggga aacttgggga gcttgttgat ggtctggtgg tgccttctgc tctggtcacg
721 gcaattctgg aggctccagt gacagagccc aggttcttgg agcagctaca ggagctggat
781 gccaaggcag ccgcagtcag agagcaggaa gctagaggca cagcagcctg cgcagatgtc
841 agaggcgtgc tcgatcggct ccgggtcaag gcagtgacga agatccgaga gtttatcctc
901 cagaagattt attccttcag gaaacccatg accaactatc agatccccca gacggccctg
961 ctgaagtaca ggttcttcta tcagtttctg ttgggcaatg aacgagcaac agcaaaggag
1021 atcagggatg aatatgtgga gacgctgagc aagatttacc tgtcttacta ccgctcttac
1081 ctggggcggc tcatgaaggt gcagtatgag gaagtcgctg agaaagatga tctaatgggt
1141 gtggaagata cagcaaagaa aggattcttc tcaaagccat cgctccgcag caggaacacc
1201 attttcaccc taggaacccg cggctctgtc atctccccca ctgaacttga ggcccccatc
1261 ctggtgcctc acacagcgca gcgcggagag cagaggtatc catttgaggc cctcttccgc
1321 agccagcact acgccctcct agacaattcc tgccgcgaat accttttcat ctgtgaattt
1381 tttgttgtgt ctggcccagc tgcacacgac ctgttccatg ctgtcatggg ccgtacactc
1441 agcatgaccc tgaaacacct ggattcttat ctagctgact gctacgatgc cattgctgtt
1501 tttctctgta tccacattgt tctccggttc cgtaacattg cagcaaagag ggatgttcct
1561 gccctggaca ggtactggga acaggtgctt gccttgctat ggccacggtt tgaactgatc
1621 ctggagatga atgttcagag cgtccgaagc actgaccccc agcgcctagg ggggttggat
1681 actcggcccc actatatcac acgccgctat gcagagttct cctccgctct tgtcagtatc
1741 aaccagacaa ttcctaatga acggaccatg caattgctgg gacagctgca ggtggaggtg
1801 gagaattttg tcctccgagt ggcagctgag ttctcctcaa ggaaggagca gcttgtgttt
1861 ctgatcaaca actatgacat gatgctgggt gtgctgatgg agcgggctgc agatgacagc
1921 aaagaggttg agagcttcca gcagctgctc aatgctcgga cacaggaatt cattgaagag
1981 ttgctgtctc ccccttttgg gggtttagtg gcatttgtga aggaggctga ggctttgatt
2041 gagcgtggac aggctgagcg acttcgaggg gaagaagccc gggtaactca gctgatccgt
2101 ggctttggta gttcctggaa atcatcagtg gaatctctga gtcaggatgt aatgcggagt
2161 ttcaccaact tcagaaatgg caccagtatc attcagggag cgctgaccca gctgatccag
2221 ctctatcatc gcttccaccg ggtgctgtcc cagccgcagc tccgagccct ccctgcccgg
2281 gctgagctca tcaacattca ccaccttatg gtggagctca agaagcataa gcccaacttc
2341 tgatgtgcca gaaaccgccc tgagatctgc cggtcatctc catggacttc tgcaccccat
2401 tccataccct tcttcacctg gggtacccct tccagttttc cccttgcttc ccaggccctt
2461 gacatggctt acctgccttc actcccagca ccttgcccaa caggataagc tggatcccct
2521 tggccttctg aatatcccag tgtcttcagg tttcccaaga ccacttccct gtgggcttcc
2581 aaaatggcct ttatcatttc tccagtctgt caccctcctt tcctgctccc atacacccaa
2641 ggcttgtttc ttcccctgta aaaaccactg cctcaatctc tggttcactc aactagtcac
2701 catgtcctga ggcatgaagc ctcctcagct cttggaattg ctggcaaggg gtgactgcct
2761 ctgagtcatt gtgtttttca aagtgatttc ttttctgtag ctttttgacc taagatctca
2821 gcaatttgaa cactaacctc tcccctcctg gctcaagaat tactccgaag tcagtctgca
2881 gaaaataaat atttagtatg acatgaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2941 aaaaaaaa
//