LOCUS BC040112 2098 bp mRNA linear HUM 06-OCT-2005
DEFINITION Homo sapiens SNW domain containing 1, mRNA (cDNA clone
IMAGE:5581513), partial cds.
ACCESSION BC040112
VERSION BC040112.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2098)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2098)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC040112.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: h Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18860912.
FEATURES Location/Qualifiers
source 1..2098
/db_xref="H-InvDB:HIT000095998"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5581513"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2098
/gene="SNW1"
/gene_synonym="Bx42"
/gene_synonym="NCOA-62"
/gene_synonym="Prp45"
/gene_synonym="PRPF45"
/gene_synonym="SKIP"
/db_xref="GeneID:22938"
/db_xref="HGNC:HGNC:16696"
/db_xref="IMGT/GENE-DB:16696"
/db_xref="MIM:603055"
CDS <1..1598
/gene="SNW1"
/gene_synonym="Bx42"
/gene_synonym="NCOA-62"
/gene_synonym="Prp45"
/gene_synonym="PRPF45"
/gene_synonym="SKIP"
/codon_start=3
/product="SNW1 protein"
/protein_id="AAH40112.1"
/db_xref="GeneID:22938"
/db_xref="HGNC:HGNC:16696"
/db_xref="IMGT/GENE-DB:16696"
/db_xref="MIM:603055"
/translation="FLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKG
WIPRLLEDFGDGGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQS
KDKVIYSKYTDLVPKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPV
RAADKLAPAQYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPP
SPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHIN
ENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIK
THVEKEDGEARERDEIRHDRRKERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVP
NPRTSNEVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLD
KDMYGDDLEARIKTNRFVPDKEFSGSDRRQRGREGPVQFEEDPFGLDKFLEEAKQHGG
SKRPSDSSRPKEHEHEGKKRRKE"
BASE COUNT 693 a 409 c 514 g 482 t
ORIGIN
1 gctttttacc tgcacctact cagctatctc aggaccagct tgaggctgaa gaaaaggcaa
61 gatcccagag atcacggcag acctcactgg tctcctcccg aagagaacct cccccgtacg
121 gataccggaa aggctggata cctcggttat tagaggattt tggagatgga ggtgcttttc
181 cagagatcca tgtggcccag tatccactgg atatgggacg aaagaaaaaa atgtcgaatg
241 cgctggccat tcaggtggat tctgaaggaa aaattaaata tgatgcaatt gctcgacaag
301 gacagtcaaa agacaaggtc atttatagca aatacactga cctggttcca aaggaggtta
361 tgaatgcaga tgatccagac ctgcaaaggc ccgatgaaga agctattaaa gagataacag
421 aaaagacaag agtagcctta gaaaaatctg tatcacagaa ggtcgccgca gccatgccag
481 ttcgagcagc tgacaaattg gctcctgctc agtatatccg atacacacca tctcagcaag
541 gagtggcatt caactctgga gctaaacaga gggttattcg gatggtagaa atgcagaaag
601 atccaatgga gcctccaagg ttcaagatta ataagaaaat tccccgggga ccaccttctc
661 ctcctgcgcc tgtcatgcat tctcctagcc gaaagatgac tgtaaaggaa caacaagagt
721 ggaagattcc tccttgtatt tctaactgga aaaatgcaaa gggttataca attccattag
781 acaaacgtct ggctgctgat ggaagaggac tacagacagt acacataaat gaaaatttcg
841 ccaaattggc agaagccctc tacattgctg atcggaaggc tcgtgaagct gtggaaatgc
901 gtgcccaagt agagagaaaa atggctcaga aagaaaagga aaaacatgaa gagaaactta
961 gagaaatggc ccagaaagcc agggagagaa gagctgggat caaaactcat gtggaaaaag
1021 aggatgggga ggcacgtgag agggatgaaa tccggcatga caggcgaaaa gagagacagc
1081 atgaccggaa tctttccagg gcagctcctg ataagaggtc gaaacttcag agaaatgaaa
1141 atcgggatat cagtgaagtt attgctctcg gtgttcctaa tcctcggact tccaatgaag
1201 ttcagtatga ccaaaggctc ttcaaccaat ccaagggtat ggacagtgga tttgcaggtg
1261 gagaagatga aatttataat gtttatgatc aagcctggag aggtggtaaa gatatggccc
1321 agagtattta taggcccagt aaaaatctgg acaaggacat gtatggtgat gacctagaag
1381 ccagaataaa gaccaacaga tttgttcccg acaaggagtt ttctggttca gaccgtagac
1441 agagaggccg agaaggacca gttcagtttg aggaagatcc ttttggtttg gacaagtttt
1501 tggaagaagc caaacagcat ggtggctcta aaagaccctc agatagcagc cgccccaagg
1561 aacacgagca tgaaggcaag aagaggagga aggaataggc acaggtctct ccaaagtgaa
1621 tgaactctta cccataaccc taatgatgca agtcatatgg gggaacactt tgtaaatggt
1681 caggataaaa accaaatctg ggtgccagat cccagcacta ctttttatta ctggagaaat
1741 gggggggata gaaaattcta ctttgaatta tttagttttt tttaaagagt gggttgtgtt
1801 tgtgcttctc ccacctttca gcatttatag aacatgctgc cccacataca aagtcaagac
1861 cacttacttt tatgtgacac tagtagtttg gggttaatgt tttgtgtaag aacagctgca
1921 tatgagtaaa gttaccccaa ccacagtgag gaggaagatg ttcacatact ggaactgtcc
1981 tgccaaataa attttgcccc tattgtgctc tgttttaatt tggagtgggc aaagtaacct
2041 cttgcttggt gcaactattt gtttcaaata aaaacattta gacaaaaaaa aaaaaaaa
//