LOCUS BC039730 2928 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens glypican 5, mRNA (cDNA clone MGC:47702 IMAGE:5744533),
complete cds.
ACCESSION BC039730
VERSION BC039730.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2928)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2928)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: j Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34106705.
FEATURES Location/Qualifiers
source 1..2928
/db_xref="H-InvDB:HIT000052241"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47702 IMAGE:5744533"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2928
/gene="GPC5"
/db_xref="GeneID:2262"
/db_xref="HGNC:HGNC:4453"
/db_xref="MIM:602446"
CDS 391..2109
/gene="GPC5"
/codon_start=1
/product="glypican 5"
/protein_id="AAH39730.1"
/db_xref="GeneID:2262"
/db_xref="HGNC:HGNC:4453"
/db_xref="MIM:602446"
/translation="MDAQTWPVGFRCLLLLALVGSARSEGVQTCEEVRKLFQWRLLGA
VRGLPDSPRAGPDLQVCISKKPTCCTRKMEERYQIAARQDMQQFLQTSSSTLKFLISR
NAAAFQETLETLIKQAENYTSILFCSTYRNMALEAAASVQEFFTDVGLYLFGADVNPE
EFVNRFFDSLFPLVYNHLINPGVTDSSLEYSECIRMARRDVSPFGNIPQRVMGQMGRS
LLPSRTFLQALNLGIEVINTTDYLHFSKECSRALLKMQYCPHCQGLALTKPCMGYCLN
VMRGCLAHMAELNPHWHAYIRSLEELSDAMHGTYDIGHVLLNFHLLVNDAVLQAHLNG
QKLLEQVNRICGRPVRTPTQSPRCSFDQSKEKHGMKTTTRNSEETLANRRKEFINSLR
LYRSFYGGLADQLCANELAAADGLPCWNGEDIVKSYTQRVVGNGIKAQSGNPEVKVKG
IDPVINQIIDKLKHVVQLLQGRSPKPDKWELLQLGSGGGMVEQVSGDCDDEDGCGGSG
SGEVKRTLKITDWMPDDMNFSDVKQIHQTDTGSTLDTTGAGCAVATESMTFTLISVVM
LLPGIW"
BASE COUNT 808 a 650 c 709 g 761 t
ORIGIN
1 ctgctgcgag ccgagccggg cggcggcggc agtggcggca gtggcggcag cggcagcagt
61 tgcagcagtg gtggccagag cggatgcttg cgggctccct gcggctccac tagttttctt
121 cgccccgccc agccgcccac tcttctcggc tagggaagaa gaccagaggg tgctcagctg
181 gaaaactctg gtgtctcagc ttagggcctc ctccgggaag agctaactgc tcccaggtga
241 agccggtgcc cgcgggcggt ccgtacaccc cgcagccggc tcgcaccgct cgagagcctc
301 ggccgctgtg tcttccacgt ctgcagctca gccagggcgc gcagggcgag tggggtccac
361 tggcgggtaa aggggaccag gacggcgagg atggacgcac agacctggcc cgtgggcttt
421 cgctgcctcc tccttctggc cctggttggg tccgcccgca gcgagggcgt gcagacctgc
481 gaagaagttc ggaaactttt ccagtggcgg ctgctgggag ctgtcagggg gctgccggat
541 tcgccgcggg caggacctga tcttcaggtt tgcatatcca aaaagcctac atgttgcacc
601 aggaagatgg aggagagata tcagattgcg gctcgccagg atatgcagca gtttcttcaa
661 acgtccagct ctacattaaa gtttctaata tctcgaaatg cggctgcttt tcaagaaacc
721 cttgaaactc tcatcaaaca agcagaaaat tacaccagta tacttttttg cagtacctac
781 aggaacatgg ccttggaggc tgctgcttcg gttcaggagt tcttcactga tgtggggctg
841 tatttatttg gtgcggatgt taatcctgaa gaatttgtaa acagattttt tgacagtctt
901 tttcctctgg tctacaacca cctcattaac cctggtgtga ctgacagttc cctggaatac
961 tcagaatgca tccggatggc tcgccgggat gtgagtccat ttggtaatat tccccaaaga
1021 gtaatgggac agatggggag gtccctgctg cccagccgca cttttctgca ggcactcaat
1081 ctgggcattg aagtcatcaa caccacagac tatctgcact tctccaaaga gtgcagcaga
1141 gccctcctga agatgcaata ctgcccgcac tgccaaggcc tggcgctcac taagccttgt
1201 atgggatact gcctcaatgt catgcgaggc tgcctggcgc acatggcgga gcttaatcca
1261 cactggcatg catatatccg gtcgttggaa gaactctcgg atgcaatgca tggaacatac
1321 gacattggac acgtgctgct gaactttcac ttgcttgtta atgatgctgt gttacaggct
1381 cacctcaatg gacaaaaatt attggaacag gtaaatagga tttgtggccg ccctgtaaga
1441 acacccacac aaagcccccg ttgttctttt gatcagagca aagagaagca tggaatgaag
1501 accaccacaa ggaacagtga agagacgctt gccaacagaa gaaaagaatt tatcaacagc
1561 cttcgactgt acaggtcatt ctatggaggt ctagctgatc agctttgtgc taatgaatta
1621 gctgctgcag atggacttcc ctgctggaat ggagaagata tagtaaaaag ttatactcag
1681 cgtgtggttg gaaatggaat caaagcccag tctggaaatc ctgaagtcaa agtcaaagga
1741 attgatcctg tgataaatca gattattgat aaactgaagc atgttgttca gttgttacag
1801 ggtagatcac ccaaacctga caagtgggaa cttcttcagc tgggcagtgg tggaggcatg
1861 gttgaacaag tcagtgggga ctgtgatgat gaagatggtt gcgggggatc aggaagtgga
1921 gaagtcaaga ggacactgaa gatcacagac tggatgccag atgatatgaa cttcagtgat
1981 gtaaagcaaa tccatcaaac agacactggc agtactttag acacaacagg agcaggatgt
2041 gcagtggcga ctgaatctat gacattcact ctgataagtg tggtgatgtt acttcccggg
2101 atttggtaac tgaactcttc tgtcctgaca taccttactg aagtctcgat ttcttctctc
2161 tctgcatatg cctggaataa gagatccttt ttcaatgtaa caattatatt tatgaaaaga
2221 tatgttacac taacttctca gaagccaagc tgaaatattc ataaagtccc taaaactcaa
2281 cgtttaaatg acacacttta aaaatatgtc ttttttcaat ctaactgaaa accttcttaa
2341 cttctaatat attaaatctg aagatgtgaa gggcacagaa gtgactttga ataagaagaa
2401 tttagtgtat ctgtaatttt attatcaatt ccaagcccct tcctttctaa attaaaaatg
2461 ttttcatttg aaagtgtatt tgccagacaa tgaaaacagt atgcagtatt tcttaaagta
2521 ttgaaattag aatatcatga aataaatcaa aacatacaat ggcaagtagt atgcatgcat
2581 attcaagaga ctcttccatt tttgcaagct gtagaaggaa atgtctgaat gtctataagt
2641 tatggggtag attcttgaga agcatttcat ataatttcac tgaagaacct tgataatttt
2701 gacccactgt aacttagcca ctgatgaacc ttaaagctga gtattttatt aacacctgat
2761 ttgtattcca ttatattcaa aatgcatctt tggtattgtg cctctgctcc catctctctc
2821 tttgcctcat agatttagct atgttgggaa gcacatgctt gctctaggaa tatctccaat
2881 aaagctgtta actatttggt ggaaaaaaaa aaaaaaaaaa aaaaaaaa
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