LOCUS BC039610 1814 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 13
(APO-1/CD95 (Fas)-associated phosphatase), mRNA (cDNA clone
IMAGE:5495336), partial cds.
ACCESSION BC039610
VERSION BC039610.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1814)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1814)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: f Column: 15.
FEATURES Location/Qualifiers
source 1..1814
/db_xref="H-InvDB:HIT000095844"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5495336"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1814
/gene="PTPN13"
/gene_synonym="FAP-1"
/gene_synonym="PNP1"
/gene_synonym="PTP-BAS"
/gene_synonym="PTP-BL"
/gene_synonym="PTP1E"
/gene_synonym="PTPL1"
/gene_synonym="PTPLE"
/db_xref="GeneID:5783"
/db_xref="MIM:600267"
CDS 1..>1814
/gene="PTPN13"
/gene_synonym="FAP-1"
/gene_synonym="PNP1"
/gene_synonym="PTP-BAS"
/gene_synonym="PTP-BL"
/gene_synonym="PTP1E"
/gene_synonym="PTPL1"
/gene_synonym="PTPLE"
/codon_start=1
/product="PTPN13 protein"
/protein_id="AAH39610.1"
/db_xref="GeneID:5783"
/db_xref="MIM:600267"
/translation="MDEATYSSSQDHQTPKQESSSSVNTSNKMNFKTFSSSPPKPGDI
FEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV
SLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSKEHVPVTPQCTLSDQNAQGQGPEKV
KKTTQVKDYSFVTEENTFEVKLFKNSSGLGFSFSREDNLIPEQINASIVRVKKLFPGQ
PAAESGKIDVGDVILKVNGASLKGLSQQEVISALRGTAPEVFLLLCRPPPGVLPEIDT
ALLTPLQSPAQVLPNSSKDSSQPSCVEQSTSSDENEMSDKSKKQCKSPSRRDSYSDSS
GSGEDDLVTAPANISNSTWSSALHQTLSNMVSQAQSHHEAPKSQEDTICTMFYYPQKI
PNKPEFEDSNPSPLPPDMAPGQSYQPQSESASSSSMDKYHIHHISEPTRQENWTPLKN
DLENHLEDFELEVELLITLIKSEKGSLGFTVTKGNQRIGCYVHDVIQDPAKSDGRLKP
GDRLIKVNDTDVTNMTHTDAVNLLRAASKTVRLVIGRVLELPRIPMLPHLLPDITLTC
NKEELGFSLCGGHDSLYQVVYISDINPRSVAAIEKKKK"
BASE COUNT 608 a 380 c 383 g 443 t
ORIGIN
1 atggatgaag ccacttactc cagcagtcag gatcatcaaa caccaaaaca ggaatcttcc
61 tcttcagtga atacatccaa caagatgaat tttaaaactt tttcttcatc acctcctaag
121 cctggagata tctttgaggt tgaactggct aaaaatgata acagcttggg gataagtgtc
181 acgggaggtg tgaatacgag tgtcagacat ggtggcattt atgtgaaagc tgttattccc
241 cagggagcag cagagtctga tggtagaatt cacaaaggtg atcgcgtcct agctgtcaat
301 ggagttagtc tagaaggagc cacccataag caagctgtgg aaacactgag aaatacagga
361 caggtggttc atctgttatt agaaaaggga caatctccaa catctaaaga acatgtcccg
421 gtaaccccac agtgtaccct ttcagatcag aatgcccaag gtcaaggccc agaaaaagtg
481 aagaaaacaa ctcaggtcaa agactacagc tttgtcactg aagaaaatac atttgaggta
541 aaattattta aaaatagctc aggtctagga ttcagttttt ctcgagaaga taatcttata
601 ccggagcaaa ttaatgccag catagtaagg gttaaaaagc tctttcctgg acagccagca
661 gcagaaagtg gaaaaattga tgtaggagat gttatcttga aagtgaatgg agcctctttg
721 aaaggactat ctcagcagga agtcatatct gctctcaggg gaactgctcc agaagtattc
781 ttgcttctct gcagacctcc acctggtgtg ctaccggaaa ttgatactgc gcttttgacc
841 ccacttcagt ctccagcaca agtacttcca aacagcagta aagactcttc tcagccatca
901 tgtgtggagc aaagcaccag ctcagatgaa aatgaaatgt cagacaaaag caaaaaacag
961 tgcaagtccc catccagaag agacagttac agtgacagca gtgggagtgg agaagatgac
1021 ttagtgacag ctccagcaaa catatcaaat tcgacctgga gttcagcttt gcatcagact
1081 ctaagcaaca tggtatcaca ggcacagagt catcatgaag cacccaagag tcaagaagat
1141 accatttgta ccatgtttta ctatcctcag aaaattccca ataaaccaga gtttgaggac
1201 agtaatcctt cccctctacc accggatatg gctcctgggc agagttatca accccaatca
1261 gaatctgctt cctctagttc gatggataag tatcatatac atcacatttc tgaaccaact
1321 agacaagaaa actggacacc tttgaaaaat gacttggaaa atcaccttga agactttgaa
1381 ctggaagtag aactcctcat taccctaatt aaatcagaaa aaggaagcct gggttttaca
1441 gtaaccaaag gcaatcagag aattggttgt tatgttcatg atgtcataca ggatccagcc
1501 aaaagtgatg gaaggctaaa acctggggac cggctcataa aggttaatga tacagatgtt
1561 actaatatga ctcatacaga tgcagttaat ctgctccggg ctgcatccaa aacagtcaga
1621 ttagttattg gacgagttct agaattaccc agaataccaa tgttgcctca tttgctaccg
1681 gacataacac taacgtgcaa caaagaggag ttgggttttt ccttatgtgg aggtcatgac
1741 agcctttatc aagtggtata tattagtgat attaatccaa ggtccgtcgc agccattgaa
1801 aaaaaaaaaa aaaa
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