LOCUS BC039574 2238 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens vacuolar protein sorting 4 homolog B (S. cerevisiae),
mRNA (cDNA clone MGC:48692 IMAGE:6042862), complete cds.
ACCESSION BC039574
VERSION BC039574.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2238)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2238)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 84 Row: n Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17865801.
FEATURES Location/Qualifiers
source 1..2238
/db_xref="H-InvDB:HIT000052208"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48692 IMAGE:6042862"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2238
/gene="VPS4B"
/gene_synonym="MIG1"
/gene_synonym="VPS4-2"
/db_xref="GeneID:9525"
/db_xref="HGNC:HGNC:10895"
/db_xref="MIM:609983"
CDS 168..1502
/gene="VPS4B"
/gene_synonym="MIG1"
/gene_synonym="VPS4-2"
/codon_start=1
/product="vacuolar protein sorting 4 homolog B (S.
cerevisiae)"
/protein_id="AAH39574.1"
/db_xref="GeneID:9525"
/db_xref="HGNC:HGNC:10895"
/db_xref="MIM:609983"
/translation="MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV
VKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADEKGNDS
DGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF
TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN
LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG
ATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTD
GYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAI
EMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG"
BASE COUNT 710 a 420 c 492 g 616 t
ORIGIN
1 ggagagagtg ttgtctaaaa caagttccgg aagggaggct gcccttcgcg gtccgagaac
61 caccggcctc cccagtttga gggctgttac cccgtgcgcg cttcgacgtt gctgctgttg
121 gctctcctcg cccctcgttc ccttgggaac cgcctgggaa ctccgccatg tcatccactt
181 cgcccaacct ccagaaagcg atagatctgg ctagcaaagc agcgcaagaa gacaaggctg
241 ggaactacga agaagccctt cagctctatc agcatgctgt gcagtatttt cttcatgtcg
301 ttaaatatga agcacagggt gataaagcca agcaaagtat cagggcaaag tgtacagaat
361 atcttgatag agcagaaaaa ctaaaggagt acctgaaaaa taaagagaaa aaagcacaga
421 agccagtgaa agaaggacag ccgagtccag cagatgagaa ggggaatgac agtgatgggg
481 aaggagaatc tgatgatcct gaaaaaaaga aactacagaa tcaacttcaa ggtgccattg
541 ttatagaacg accaaatgtg aaatggagtg acgttgctgg acttgaagga gccaaagaag
601 cactgaaaga ggctgtgata ctgcctatta aatttcctca tctttttaca ggcaagagaa
661 caccttggag gggaatccta ttatttgggc cgcctggaac aggaaagtcc tacttagcca
721 aagctgtagc aacagaagcc aacaactcaa catttttttc aatatcttcc tctgatcttg
781 tttctaagtg gctaggtgaa agtgaaaaac tggttaagaa tttattccaa cttgccagag
841 agaacaagcc ctccattatc ttcattgatg aaattgattc tctctgtggt tcaagaagtg
901 aaaatgaaag tgaagccgca cgtagaatta agacggagtt cctagtgcaa atgcaagggg
961 ttggtgtaga caatgatgga attttggttc tgggagctac aaatataccc tgggttctgg
1021 attctgccat taggcgaaga tttgagaaac gaatttatat tcccttgccg gaaccccatg
1081 cccgagcagc aatgtttaaa ctgcacctag ggaccactca gaacagtctc acggaagcag
1141 actttcggga acttgggagg aaaacagatg gttattcagg ggcagatata agtatcattg
1201 tacgtgatgc ccttatgcag cctgttagga aagtacagtc agctactcat tttaaaaagg
1261 ttcgcggacc ttcccgagct gatcctaacc atcttgtaga tgatctgcta acaccttgct
1321 ctccaggtga ccctggtgcc attgaaatga catggatgga tgtccctgga gataaacttt
1381 tggagccagt tgtttccatg tcggatatgt tgcggtcact atctaacaca aaacctacag
1441 tcaatgaaca tgacttgttg aaattaaaga agtttacaga agattttggt caagaaggct
1501 aagccaaaga caaggaagat gcttaccata tgtattcttt ctttcataga tatttttgtc
1561 tatttggatc gcattaattg tttccagtaa aactctttta ccacagggaa atacacatct
1621 cacttcagag ttccattagg ttttatattg tacttttcct ccattactta ttaaatactc
1681 ctattaacaa aaggtacaaa ataacaggtt atgaggaaat gagcgatata tgaacggcat
1741 aaaaacagaa attacccagt aaaaaggatg tcagaaattg acatacaaat atttacaatt
1801 tttatgaatg gtggtctttg caaagagcat ttatattttc tttttttttt actaaaatga
1861 tatagggttt attttatatt ttcaaaaaaa ttgttaaaca tcattcttat caatgtaaaa
1921 tttacgttat taaaaaatta caaatgatag aatctttact cagggatggg caataaaaca
1981 gcaaagagct ttgtgattgg gtttgaaaga ttttgaatta tagacagtgc tcttaatagt
2041 ttttaataag ttgatatttt tttctgtgta gatttaaata atttctttaa aagcgtaagc
2101 tttggctggg catggtggct tatgcctgta atcccagcac tttgggaggc tacgatgggt
2161 ggatcacctg aggtcaggag ttcaagacca gtctggccaa catggtgaaa tgccgtctct
2221 actaaaaaaa aaaaaaaa
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