LOCUS BC039205 5103 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens synaptotagmin XI, mRNA (cDNA clone MGC:26698
IMAGE:4819614), complete cds.
ACCESSION BC039205
VERSION BC039205.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5103)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5103)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: p Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377588.
FEATURES Location/Qualifiers
source 1..5103
/db_xref="H-InvDB:HIT000052161"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26698 IMAGE:4819614"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5103
/gene="SYT11"
/gene_synonym="KIAA0080"
/gene_synonym="MGC10881"
/gene_synonym="MGC17226"
/gene_synonym="SYT12"
/db_xref="GeneID:23208"
/db_xref="HGNC:HGNC:19239"
/db_xref="MIM:608741"
CDS 254..1549
/gene="SYT11"
/gene_synonym="KIAA0080"
/gene_synonym="MGC10881"
/gene_synonym="MGC17226"
/gene_synonym="SYT12"
/codon_start=1
/product="synaptotagmin XI"
/protein_id="AAH39205.1"
/db_xref="GeneID:23208"
/db_xref="HGNC:HGNC:19239"
/db_xref="MIM:608741"
/translation="MAEITNIRPSFDVSPVVAGLIGASVLVVCVSVTVFVWSCCHQQA
EKKHKNPPYKFIHMLKGISIYPETLSNKKKIIKVRRDKDGPGREGGRRNLLVDAAEAG
LLSRDKDPRGPSSGSCIDQLPIKMDYGEELRSPITSLTPGESKTTSPSSPEEDVMLGS
LTFSVDYNFPKKALVVTIQEAHGLPVMDDQTQGSDPYIKMTILPDKRHRVKTRVLRKT
LDPVFDETFTFYVIPYSQLQDLVLHFLVLSFDRFSRDDVIGEVMVPLAGVDPSTGKVQ
LTRDIIKRNIQKCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITGLSGNPYVKV
NVYYGRKRIAKKKTHVKKCTLNPIFNESFIYDIPTDLLPDISIEFLVIDFDRTTKNEV
VGRLILGAHSVTASGAEHWREVCESPRKPVAKWHSLSEY"
BASE COUNT 1360 a 1188 c 1193 g 1362 t
ORIGIN
1 agaaggcgga gcctacctct catcaggacc agtctgactg cacctgcatc cttagctcag
61 agcatccccg gagcatctta agagctgagc gcagctgaca actaggggcc ggaccgtcgc
121 aggaggcgtc cgctggatac cttccccctt ccctgaccta gagctctaca gctgctgcct
181 cggtactgac cgagggttcc cagagctgtc tcaccattgc aaaaacgtta tagcaacagc
241 ctctgattac gacatggctg agatcaccaa tatccgacct agctttgatg tgtcaccggt
301 ggtggccggc ctcatcgggg cctctgtgct ggtggtgtgt gtctcggtga ccgtctttgt
361 ctggtcatgc tgccaccagc aggcagagaa gaagcacaag aacccaccat acaagtttat
421 tcacatgctc aaaggcatca gcatataccc agagaccctc agcaacaaga agaaaatcat
481 caaagtgcgg agagacaaag atggtcctgg gagggaaggt ggacgtagga acctgttggt
541 ggacgcagca gaggctggcc tgctaagccg agacaaagat cccagggggc ctagctctgg
601 atcttgtata gaccaattac ccatcaaaat ggactatggg gaagaactaa ggagccctat
661 tacaagcctg acccctgggg agagcaaaac cacctctcca tcatctccag aggaggatgt
721 catgctagga tccctcacct tctcagtgga ctataacttc ccgaaaaaag ccctggtggt
781 gacaatccag gaggcccacg ggctgccagt gatggatgac cagacccagg gatctgaccc
841 ctacatcaaa atgaccatcc ttcctgacaa acggcatcgg gtgaagacca gagtgctgcg
901 gaagaccctg gaccctgtgt ttgacgagac cttcaccttc tatgtcatcc cctacagcca
961 gctgcaggac ctggtgctgc acttccttgt cctcagcttt gaccgcttct ctcgggatga
1021 tgtcattggc gaggtcatgg tgccactggc aggggtggac cccagcacag gcaaggtaca
1081 actgaccagg gacatcatca aaaggaatat ccagaagtgc atcagcagag gggagctcca
1141 ggtgtctctg tcatatcagc ctgtggcaca gagaatgaca gtggtggtcc tcaaagccag
1201 acacttgccg aagatggata tcaccggtct ctcaggtaat ccttatgtca aggtgaacgt
1261 ctactacggc agaaagcgca ttgccaagaa gaaaacccat gtgaagaagt gcactttgaa
1321 ccccatcttc aatgaatctt tcatctacga catccccact gacctcctgc ctgatatcag
1381 catcgagttc ctcgttatcg acttcgatcg caccaccaag aatgaggtgg tggggaggct
1441 gatcctgggg gcacacagtg tcacagccag tggtgctgaa cactggagag aggtctgcga
1501 gagcccccgc aagcctgtgg ccaagtggca cagtctgagc gagtactaat cctgttcttc
1561 tctcctctaa tccccggggg ccaagctggg gagggatgtg gaggggaaaa agatgacaga
1621 gaagtggact ccaaacctca ttttagttgt agaagaaaat ttcttacaaa acaaattcca
1681 caaagaacac cctatatgac cacagctgca gatcagttct tagcaatgat gttttttttt
1741 ctgctttgca aggcgctaga atcttttatt ttactttatt ttttttgagg tggagtttcg
1801 ctcttgttgc ccgggctgga gtgcaatggt gagatctcaa ctcactgcaa cctctgccct
1861 tcaggttcaa gtgattctcc tccctcagcc tcccaagtag ctgggattac aggcacccac
1921 gagcatgccc ggctaatttt ttgtattttc agtagagatg ggtttcacca tgttggccag
1981 gctggtctcg aattccagac ctcaggtgat ccacccgcct cggcctccca aagtgctggg
2041 attacaggtg cgagccaccg tgcccggcct ctggttttgt tttgtttttt ttttttaatg
2101 ggggacaaaa gagagggaaa gacccctata aatctatata taacaatgta accatatact
2161 tgcatgtcta atacaaactg aagaaattag cctaactgcc aatatcaagt tgcagatttt
2221 aatccatgga aattgtgttt tgtgctgaat tgtatttgct gattacctga aattggcttc
2281 tttttattgg gcttctctgg agaatttctc ccactcccca cctctgcaga agaaaatttt
2341 gctcttataa aacctcatgt tttcatcatt cctatctttt ctttttattg cctcttatat
2401 ctctgctctt tgacctcaag gtctagaggt ctgcagtaag ccaagaaaca aaggtggggt
2461 ggatgaggca aggtttgcag gagaaagagg aattgagaaa tggggtattt ttgctatcag
2521 ctcttctgct atgaagtagt aaaaggcagt ctataattaa ctgacagacc taactgaagc
2581 acagagaata catcagactt atgcatccaa gacatcagaa cttggatttt atcaaacttg
2641 atgacttctc taaaaggagc tttggaaact tcaaattcag ctataggata gtaccaatga
2701 acacatccag ctgatcccaa aagctgtttt caggtataag gacaaggaga ggagacaagt
2761 gacgacagcc attccccttt gcagctatct actgtagtga cagccatttc ttggttgatg
2821 ggttggaagt catcagaggt ttgaagaatt acactggcct ttgtttttct ggaaatgccg
2881 accatggaga tgctttagag tcttctaaaa tagcttagat gttgtaatga ggttagcttt
2941 gcttcataaa acaggggccc tcagaagttc tccttaaatt tttcaataaa aatttagctc
3001 ttaaaaaaat aacagtgtga ctgagtgaat gaagataagt tggattcttt cagagcattc
3061 ttttcctcaa aacgagctgc ataattcttg gaatttatgt cttaccacat ggtggaggga
3121 tgggggaact acaggatgca attcttcttc taccaatggg caatagaggt tgagagagat
3181 tcagcatctt tctgggatta gaattcaagt ctctttactc ctacagcagc tgcgtctcca
3241 acgttgagac tttgcagatg gcacagactc catggataat aggtaaactt ggggccgggc
3301 gcagtggctc acgcctgtaa tcccggtatt ttgggaggcc gaggtggaaa gatcgcttga
3361 gcccaggagt tcaagaccag cctgggctac atgacgaaac tccatctcta tcaaaaatac
3421 aaaaaattaa ctaggtgtgg tgctgcacgc ctgtggtccc agctattcag gaggctgagg
3481 tgggaggatc atttgagccc agaggtagag gctgcagtga gccatgatca tgccactgca
3541 ctctgggctg ggtaacagag tgagatcctg tctcaaaaat taattaatta attaattaaa
3601 ataaactagg taaacttgga taggcagtag atatttttgc ccacctgagg aggatctcag
3661 tcaagctgtt gcttaacagc ttgatccagg gcgtgaaagg ttagttgaga ctgaagtgtt
3721 cacttccata gaagaacatc acttttaacc ttgctttggc gaagggagtc ggaaagctga
3781 gtctctatgg acgggggggt gatcttgctt tcagtgttcc ctcagctttt gtggatttaa
3841 aaccattctg ctccccctaa accttttgtt tgatttcagc ccatgttctt gacaatgcag
3901 agcaattctg agcagtcaca aagcctactc tctgttcttg tccctgccaa cccccacccc
3961 ccataatctg actcacaact tcaccatcag ttggggtcat accactagtc tctgtcctat
4021 accccatgaa atgtaaatac tgtatcataa gtagaagaaa ataatttttg ttttctaaaa
4081 atgcattttg agatagttta atgtaaatct gacaggagca ttctgaagcc ccattaggaa
4141 aaaatttaaa tggttcctct tcatcgcctt aatgtctaaa gatcagaaat cgctgagcaa
4201 acccgctttt gtttccttcc cagaaacaat gcaaaacaac aggtggagat agtctggtct
4261 ttgccctgct gtgtgtgcct ctgtagctcc tcctgacaaa cgtctgggaa aacagcctca
4321 ccccactctc ctctctcttc cccatttcct tgtagcttta ttccttgcat ctttgggtct
4381 actgagcagt gggtgctgag gtgacagggg aggaaccagt tgttctgtag cctaggaact
4441 gcctcagtgt ctttgccaga aaaaggcaaa gaggcggaca gtgcagggct cctccctcct
4501 acctcaggcc tgatccatcg tgcccttgac tttgccgtct caaagtttct tagctgactt
4561 tggctttcac atttgttctt tccagagcta actgataaga gtggaggagg aatgccttct
4621 cctaagagtc agttgaaaga aagacaagag agtcacatct tagcttttgc acaaggcatt
4681 cgtggtcagg aataggttag ggaatggtca cttctgattt tccaacagtt gctccttctc
4741 tgaagagatc ttgattcctt tgggaagaca agaatttttc ttaataacaa aggtcacttt
4801 atgagttatt ccttctttca gttcatctca ctggagcaca gccaagatgg acatgtttat
4861 ggacagtgct ctagatgtga aaacagatag aactggtttg tgggacaggg gcagcttgct
4921 caggagaggg aataacgcag gtcccttttc ttggaaggct tgtactatgg ccatgacagt
4981 gacattgccc tcaccatgat ccctctccaa agtggttgtc tttctttacc ttgtgtcttc
5041 tcttgtaaaa atgaaactca aaaataaaat aaatgtgtca aatttcgaaa aaaaaaaaaa
5101 aaa
//