LOCUS BC038999 957 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ubiquitin B, mRNA (cDNA clone MGC:47606
IMAGE:4943285), complete cds.
ACCESSION BC038999
VERSION BC038999.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 957)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 957)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: b Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22538474.
FEATURES Location/Qualifiers
source 1..957
/db_xref="H-InvDB:HIT000095451"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47606 IMAGE:4943285"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..957
/gene="UBB"
/gene_synonym="MGC8385"
/db_xref="GeneID:7314"
/db_xref="HGNC:HGNC:12463"
/db_xref="MIM:191339"
CDS 108..797
/gene="UBB"
/gene_synonym="MGC8385"
/codon_start=1
/product="ubiquitin B"
/protein_id="AAH38999.1"
/db_xref="GeneID:7314"
/db_xref="HGNC:HGNC:12463"
/db_xref="MIM:191339"
/translation="MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV
KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL
TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
LHLVLRLRGGC"
BASE COUNT 256 a 247 c 252 g 202 t
ORIGIN
1 ccacgcgtcc gaggggcggt tggctttgtt gggtgagctt gtttgtgtcc ctgtgggtgg
61 acgtggttgg tgattggcag gatcctggta tccgctaaca ggtcaaaatg cagatcttcg
121 tgaaaaccct taccggcaag accatcaccc ttgaggtgga gcccagtgac accatcgaaa
181 atgtgaaggc caagatccag gataaggaag gcattccccc cgaccagcag aggctcatct
241 ttgcaggcaa gcagctggaa gatggccgta ctctttctga ctacaacatc cagaaggagt
301 cgaccctgca cctggtcctg cgtctgagag gtggtatgca gatcttcgtg aagaccctga
361 ccggcaagac catcaccctg gaagtggagc ccagtgacac catcgaaaat gtgaaggcca
421 agatccagga taaagaaggc atccctcccg accagcagag gctcatcttt gcaggcaagc
481 agctggaaga tggccgcact ctttctgact acaacatcca gaaggagtcg accctgcacc
541 tggtcctgcg tctgagaggt ggtatgcaga tcttcgtgaa gaccctgacc ggcaagacca
601 tcactctgga ggtggagccc agtgacacca tcgaaaatgt gaaggccaag atccaagata
661 aagaaggcat cccccccgac cagcagaggc tcatctttgc aggcaagcag ctggaagatg
721 gccgcactct ttctgactac aacatccaga aagagtcgac cctgcacctg gtcctgcgcc
781 tgaggggtgg ctgttaattc ttcagtcatg gcattcgcag tgcccagtga tggcattact
841 ctgcactata gccatttgcc ccaacttaag tttagaaatt acaagtttca gtaatagctg
901 aacctgttca aaatgttaat aaaggtttcg ttgcatggta gcaaaaaaaa aaaaaaa
//