LOCUS BC038989 995 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens H3 histone, family 3A, mRNA (cDNA clone MGC:47761
IMAGE:6014954), complete cds.
ACCESSION BC038989
VERSION BC038989.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 995)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 995)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: m Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52630340.
FEATURES Location/Qualifiers
source 1..995
/db_xref="H-InvDB:HIT000052107"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47761 IMAGE:6014954"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..995
/gene="H3F3A"
/gene_synonym="H3.3A"
/db_xref="GeneID:3020"
/db_xref="HGNC:HGNC:4764"
/db_xref="MIM:601128"
CDS 31..441
/gene="H3F3A"
/gene_synonym="H3.3A"
/codon_start=1
/product="H3 histone, family 3A"
/protein_id="AAH38989.1"
/db_xref="GeneID:3020"
/db_xref="HGNC:HGNC:4764"
/db_xref="MIM:601128"
/translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP
GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV
GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA"
BASE COUNT 313 a 191 c 200 g 291 t
ORIGIN
1 ccacgcgtcc ggtaaggagg tctctgtacc atggctcgta caaagcagac tgcccgcaaa
61 tcgaccggtg gtaaagcacc caggaagcaa ctggctacaa aagccgctcg caagagtgcg
121 ccctctactg gaggggtgaa gaaacctcat cgttacaggc ctggtactgt ggcgctccgt
181 gaaattagac gttatcagaa gtccactgaa cttctgattc gcaaacttcc cttccagcgt
241 ctggtgcgag aaattgctca ggactttaaa acagatctgc gcttccagag cgcagctatc
301 ggtgctttgc aggaggcaag tgaggcctat ctggttggcc tttttgaaga caccaacctg
361 tgtgctatcc atgccaaacg tgtaacaatt atgccaaaag acatccagct agcacgccgc
421 atacgtggag aacgtgctta agaatccact atgatgggaa acatttcatt ctcaaaaaaa
481 aaaaaaaatt tctcttcttc ctgttattgg tagttctgaa cgttagatat tttttttcca
541 tggggtcaaa aggtacctaa gtatatgatt gcgagtggaa aaatagggga cagaaatcag
601 gtattggcag tttttccatt ttcatttgtg tgtgaatttt taatataaat gcggagacgt
661 aaagcattaa tgcaagttaa aatgtttcag tgaacaagtt tcagcggttc aactttataa
721 taattataaa taaacctgtt aaatttttct ggacaatgcc agcatttgga tttttttaaa
781 acaagtaaat ttcttattga tggcaactaa atggtgtttg tagcattttt atcatacagt
841 agattccatc cattcactat acttttctaa ctgagttgtc ctacatgcaa gtacatgttt
901 ttaatgttgt ctgtcttctg tgctgttcct gtaagtttgc tattaaaata cattaaacta
961 taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
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