LOCUS BC038830 958 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens SNF8, ESCRT-II complex subunit, homolog (S.
cerevisiae), mRNA (cDNA clone MGC:47686 IMAGE:3900806), complete
cds.
ACCESSION BC038830
VERSION BC038830.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 958)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 958)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: a Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361379.
FEATURES Location/Qualifiers
source 1..958
/db_xref="H-InvDB:HIT000052074"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47686 IMAGE:3900806"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..958
/gene="SNF8"
/gene_synonym="Dot3"
/gene_synonym="EAP30"
/gene_synonym="VPS22"
/db_xref="GeneID:11267"
/db_xref="HGNC:HGNC:17028"
/db_xref="MIM:610904"
CDS 83..856
/gene="SNF8"
/gene_synonym="Dot3"
/gene_synonym="EAP30"
/gene_synonym="VPS22"
/codon_start=1
/product="SNF8, ESCRT-II complex subunit, homolog (S.
cerevisiae)"
/protein_id="AAH38830.1"
/db_xref="GeneID:11267"
/db_xref="HGNC:HGNC:17028"
/db_xref="MIM:610904"
/translation="MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFK
TNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGV
QIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGI
IPVGGTYLIQSVPAELNMDHTVVLQLAENGYVTVSEIKASLKWETERARQVLEHLLKE
GLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP"
BASE COUNT 245 a 231 c 308 g 174 t
ORIGIN
1 ccacgcgtcc gccggcggcg gagtccggga cgtggagacc cggggtcccg gcagccgggc
61 ggcccgcggg cccagggtgg ggatgcaccg ccgcggggtg ggagctggcg ccatcgccaa
121 gaagaaactt gcagaggcca agtataagga gcgagggacg gtcttggctg aggaccagct
181 agcccagatg tcaaagcagt tggacatgtt caagaccaac ctggaggaat ttgccagcaa
241 acacaagcag gagatccgga agaatcctga gttccgtgtg cagttccagg acatgtgtgc
301 aaccattggc gtggatccgc tggcctctgg aaaaggattt tggtctgaga tgctgggcgt
361 gggggacttc tattacgaac taggtgtcca aattatcgaa gtgtgcctgg cgctgaagca
421 tcggaatgga ggtctgataa ctttggagga actacatcaa caggtgttga agggaagggg
481 caagttcgcc caggatgtca gtcaagatga cctgatcaga gccatcaaga aactaaaggc
541 acttggcact ggcttcggca tcatccctgt gggcggcact tacctcattc agtctgttcc
601 agctgagctc aatatggatc acaccgtggt gctgcagctg gcagagaatg gctacgtgac
661 tgtcagtgag atcaaagcca gtcttaaatg ggagaccgag cgagcgcggc aagtgctgga
721 acacctgctg aaggaagggt tggcgtggct ggacttacag gccccagggg aggcccacta
781 ctggctgcca gctctcttca ctgacctcta ctcccaggag attacagctg aggaggccag
841 agaagccctc ccctgactgc atgtggaagg gcacacagca gcaggcaggg aggaggcgga
901 ggtggcaaat aaacctgggc aattttgttt atacaaaaaa tagaaaaaaa aaaaaaaa
//