LOCUS BC038799 2773 bp mRNA linear HUM 06-JAN-2004
DEFINITION Homo sapiens protocadherin 21, mRNA (cDNA clone MGC:46603
IMAGE:5492127), complete cds.
ACCESSION BC038799
VERSION BC038799.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2773)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2773)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 78 Row: m Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16933564.
FEATURES Location/Qualifiers
source 1..2773
/db_xref="H-InvDB:HIT000052069"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:46603 IMAGE:5492127"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2773
/gene="PCDH21"
/gene_synonym="DKFZp434A132"
/gene_synonym="KIAA1775"
/db_xref="GeneID:92211"
CDS 117..2354
/gene="PCDH21"
/gene_synonym="DKFZp434A132"
/gene_synonym="KIAA1775"
/codon_start=1
/product="PCDH21 protein"
/protein_id="AAH38799.1"
/db_xref="GeneID:92211"
/translation="MRRCRWAALALGLLRLCLAQANFAPHFFDNGVGSTNGNMALFSL
PEDTPVGSHVYTLNGTDPEGDPISYHISFDPSTRSVFSVDPTFGNITLVEELDRERED
EIEAIISISDGLNLVAEKVVILVTDANDEAPRFIQEPYVALVPEDIPAGSIIFKVHAV
DRDTGSGGSVTYFLQNLHSPFAVDRHSGVLRLQAGATLDYERSRTHYITVVAKDGGGR
LHGADVVFSATTTVTVNVEDVQDMAPVFVGTPYYGYVYEDTLPGSEVLKVVAMDGDRG
KPNRILYSLVNGNDGAFEINETSGAISITQSPAQLQREVYELHVQVTEMSPAGSPAAQ
ATVPVTIRIVDLNNHPPTFYGESGPQNRFELSMNEHPPQGEILRGLKITVNDSDQGAN
AKFNLQLVGPRGIFRVVPQTVLNEAQVTIIVENSAAIDFEKSKVLTFKLLAVEVNTPE
KFSSTADVVIQLLDTNDNVPKFDSLYYVARIPENAPGGSSVVAVTAVDPDTGPWGEVK
YSTYGTGADLFLIHPSTGLIYTQPWASLDAEATARYNFYVKAEDMEGKYSVAEVFITL
LDVNDHPPQFGKSVQKKTMVLGTPVKIEAIDEDAEEPNNLVDYSITHAEPANVFDINS
HTGEIWLKNSIRSLDALHNITPGRDCLWSLEVQAKDRGSPSFSTTALLKIDITDAEVR
RLRYMKNSNFPGTTKSVRKPKFKPKKPHSSQGLFLHPHCEIALFNLSNVNLYSRVFQG
AAQAS"
misc_feature 531..1151
/gene="PCDH21"
/gene_synonym="DKFZp434A132"
/gene_synonym="KIAA1775"
/note="CA; Region: Cadherin repeat domain"
/db_xref="CDD:cd00031"
BASE COUNT 717 a 800 c 684 g 572 t
ORIGIN
1 ccacgcgtcc ggctaccccc attgtggtct ctgccctccc cgcgggccca gggcatgctc
61 cgtgcccctg cgcccggtct cggcggcggc aggcgacact ccgcgccggc ggagacatga
121 ggcgctgccg gtgggccgcc ctggccctgg ggctgctgcg cctctgcttg gctcaggcca
181 acttcgcccc gcacttcttc gacaacgggg tcggcagcac caacggaaac atggctctgt
241 tcagcctccc agaggacacc cctgtaggct ctcacgtata caccctgaat gggacagacc
301 ctgagggaga ccccatctcc taccacatca gctttgaccc cagcactaga agcgtctttt
361 ctgttgaccc cacttttgga aacatcaccc tggttgaaga gctggacaga gagagggaag
421 atgagattga agccatcatc agcatttctg atggcctgaa tctggtggcc gaaaaagtcg
481 tgatcctggt gaccgatgcc aatgatgagg cgcccaggtt catccaggag ccttatgttg
541 ccctggttcc cgaggacata cctgctggga gcatcatctt taaggtccat gcagtggaca
601 gggacacagg ctctggaggg agtgtcacct acttcctgca gaacctgcac tccccatttg
661 ccgtggaccg ccacagcggt gtgctgcgcc tccaggctgg ggccactctg gactacgaga
721 ggtcccggac ccactacatc accgtggtcg ccaaggatgg cggtgggagg cttcatgggg
781 ctgatgtggt gttctcagcc accaccacgg tcacggtcaa tgtggaggat gttcaggaca
841 tggcccctgt cttcgtgggc acaccctact atggctatgt gtacgaggac acccttccgg
901 gctcggaggt actgaaggtg gtcgccatgg atggagaccg gggcaaaccc aatcgaattc
961 tctacagcct tgtaaatggg aacgatggag cctttgaaat taatgagaca tctggagcca
1021 tctccatcac tcagagcccg gcccagctcc agagagaggt gtatgagctg catgtacagg
1081 tgactgaaat gagccctgcg gggagcccag ctgcccaggc caccgtccca gtcaccatca
1141 ggattgtgga cctcaacaac cacccgccaa cattctatgg agagagcgga ccccaaaaca
1201 ggtttgagct gtccatgaat gagcacccac cccagggaga gatcctgcgg ggcctcaaga
1261 tcaccgtcaa tgactccgac cagggagcca atgccaaatt caacttgcag ctggtgggac
1321 ccaggggcat cttccgagtg gttccacaga cagtcctgaa tgaagcccaa gtcacaatca
1381 ttgtggagaa ctcagctgcc attgactttg aaaagtccaa agtattaacc ttcaagctcc
1441 tggctgttga agtgaacacc ccagagaagt tcagttccac agcggatgtt gtgatccagc
1501 tcctggacac caatgacaat gtccccaagt tcgactccct ctactacgtt gccaggattc
1561 ctgagaacgc cccagggggc tccagcgtgg tggctgtcac agctgtggat ccagatacag
1621 gaccctgggg cgaagtgaaa tattccacct atgggactgg ggcagacctc ttcctgatcc
1681 acccatccac tgggcttatc tacacccagc cctgggctag cctggacgct gaggccactg
1741 ccaggtacaa cttctatgtg aaggcagagg acatggaagg caagtacagc gtagctgagg
1801 tgtttatcac actgctggat gtcaatgacc acccccctca gtttggaaag agcgttcaga
1861 agaagacgat ggtgctaggg accccagtga aaattgaggc catagacgag gatgcagagg
1921 aacccaacaa cctggtggac tattccatca cccatgcaga gcccgccaac gtgttcgaca
1981 tcaattccca cacgggggag atctggctca agaattccat ccgctccctg gatgccctgc
2041 acaacatcac acctggaagg gactgcctat ggtccctaga ggtgcaggcc aaggaccggg
2101 gctccccatc cttcagcacc acagccttac tcaagattga catcacagat gctgaggtga
2161 gaagactaag gtacatgaaa aatagtaact tccctggtac aacaaagtca gtaagaaaac
2221 caaaatttaa gcccaagaaa ccacattcca gccagggtct gttcttgcat ccccactgcg
2281 aaattgcctt attcaatctg agtaatgtga atctgtactc tagagttttt caaggggcag
2341 cccaagcatc ttaaaaagta tcagattctc agaaatcctc cctagaccat tttccctctc
2401 cctaaatttc tatgtttaca gaagcaactg aatacttccc tacccaccaa catgctcctg
2461 gctctcccct gcactgcttg ctgctcttcc acagcccttc tctcatcctg acccctctgt
2521 ctcatgtgca ccaccaagct tcttttgctt ggcttgaagg tctgaacatc cactctcacc
2581 ttcatggtag cccaggctat ttcatgatgg tgacaccctc aagatccgta gaccactgta
2641 ttagttcgtt ctcatgctgc taataaagat acccgagact gggtaattta tagaggaaaa
2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2761 aaaaaaaaaa aaa
//