LOCUS BC038417 3915 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 30, mRNA (cDNA
clone MGC:34339 IMAGE:5171702), complete cds.
ACCESSION BC038417
VERSION BC038417.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3915)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3915)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: f Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20336289.
FEATURES Location/Qualifiers
source 1..3915
/db_xref="H-InvDB:HIT000095198"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34339 IMAGE:5171702"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3915
/gene="DHX30"
/gene_synonym="FLJ11214"
/gene_synonym="KIAA0890"
/db_xref="GeneID:22907"
/db_xref="HGNC:HGNC:16716"
CDS 320..3787
/gene="DHX30"
/gene_synonym="FLJ11214"
/gene_synonym="KIAA0890"
/codon_start=1
/product="DEAH (Asp-Glu-Ala-His) box polypeptide 30"
/protein_id="AAH38417.1"
/db_xref="GeneID:22907"
/db_xref="HGNC:HGNC:16716"
/translation="MAASRDLLKEFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPK
KKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWGLLGPRNELFDAAKYRV
LADRFGSPADSWWRPEPTMPPTSWRQLNPESIRPGGPGGLSRSLGREEEEDEEEELEE
GTIDVTDFLSMTQQDSHAPLRDSRGSSFEMTDDDSAIRALTQFPLPKNLLAKVIQIAT
SSSTAKNLMQFHTVGTKTKLSTLTLLWPCPMTFVAKGRRKAEAENKAAALACKKLKSL
GLVDRNNEPLTHAMYNLASLRELGETQRRPCTIQVPEPILRKIETFLNHYPVESSWIA
PELRLQSDDILPLGKDSGPLSDPITGKPYVPLLEAEEVRLSQSLLELWRRRGPVWQEA
PQLPVDPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIIT
QPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPSRGGALLFCTVGILLRKLQSN
PSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPALRLVLMSATGDNERFSRYFGG
CPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHESEDECALDLDLVTDLVLHID
ARGEPGGILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQQPP
VGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQR
RGRAGRCQSGFAYHLFPRSRLEKMVPFQVPEILRTPLENLVLQAKIHMPEKTAVEFLS
KAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRC
LHPLLVVVSCLTRDPFSSSLQNRAEVDKVKALLSHDSGSDHLAFVRAVAGWEEVLRWQ
DRSSRENYLEENLLYAPSLRFIHGLIKQFSENIYEAFLVGKPSDCTLASAQCNEYSEE
EELVKGVLMAGLYPNLIQVRQGKVTRQGKFKPNSVTYRTKSGNILLHKSTINREATRL
RSRWLTYFMAVKSNGSVFVRDSSQVHPLAVLLLTDGDVHIRDDGRRATISLSDSDLLR
LEGDSRTVRLLKELRRALGRMVERSLRSELAALPPSVQEEHGQLLALLAELLRGPCGS
FDVRKTADD"
BASE COUNT 907 a 1132 c 1132 g 744 t
ORIGIN
1 ccgcggttca tgcgcggtgc acagaggctt gtttcacatc tgtaacaaca ggaggaggcc
61 cagcctcgtg atgaggaata gcaaggagag aattcagctc cagttcaaaa gcctacaaaa
121 tctgagactg tcattgcttt tataaggatt ccagctttcc ctcctggcca gaaatgttca
181 gcctggactc attcagaaaa gatcgggccc agcacaggca gcgtcagtgc aaacttcccc
241 caccccgcct tccacccatg tgtgtcaacc ctaccccagg agggaccatc tctcgaggct
301 gaacgttaac atttccaaca tggcagcttc tagggaccta ttaaaagagt tcccacagcc
361 caaaaatctt ctcaacagtg tgattggaag agccctcggc atctcacatg caaaagacaa
421 actagtctac gtgcacacaa atggaccgaa gaaaaagaaa gtcacactgc acataaaatg
481 gcccaagagc gtggaggtag aaggctatgg cagcaagaag atcgatgctg agcggcaggc
541 tgcagctgca gcctgccagc tgttcaaggg ttggggtctg ctaggtcccc ggaatgagtt
601 gtttgacgca gccaaatacc gagtgctagc tgatcgcttt ggctcccctg ccgacagctg
661 gtggcgtccg gaacccacca tgccccctac ttcctggcgg cagctgaatc cagagagtat
721 tcgaccaggg ggacctgggg gcctatcccg ctctttaggc cgggaagaag aggaggacga
781 ggaggaagag ctagaagaag ggaccataga tgttaccgac ttcttgtcca tgacccagca
841 ggattcccac gctccactca gggactcaag ggggagttcc tttgagatga cagatgacga
901 cagtgccatt agggctctga cccagtttcc acttcccaag aaccttctgg ccaaggtgat
961 tcagattgca acgtcatcct ccacagctaa gaacctcatg cagttccata ctgtgggcac
1021 caagaccaag ctgtctacac tcaccctgct ctggccctgc cccatgacct ttgttgccaa
1081 agggcgccgc aaagcagagg ctgagaataa ggcggcagcc ttggcctgca agaaactgaa
1141 gagcctgggc ctggtggaca ggaacaacga accgcttaca cacgccatgt ataacctggc
1201 ctctttgcgt gagctgggtg agacccagcg ccgaccatgc accatccagg tgcccgagcc
1261 catcctccgc aagatagaga ccttcctgaa ccattaccct gtggagagtt catggatcgc
1321 cccagaactc cggctgcaga gtgatgacat cttgcccttg ggcaaggact cagggcctct
1381 gagtgaccct atcacaggca agccctatgt gcccctgttg gaagcagagg aggtacgtct
1441 cagccagagt ctgctagaac tgtggcggcg gcgagggccg gtctggcagg aggcccccca
1501 gctacctgtg gacccacatc gggacaccat cctcaacgcc attgagcagc acccggtggt
1561 ggtcatctct ggggacacgg gctgtgggaa gaccacgcgc atcccccagc tgttgctgga
1621 gcgctatgtg accgagggcc gaggtgcccg ctgcaatgtt atcatcaccc aacctcgccg
1681 catctctgct gtgtctgtgg cacagcgggt cagccacgaa ctgggcccct ccctgcgccg
1741 gaatgtgggc ttccaggtgc ggttggaaag taagccccca tcccgaggcg gggccctgct
1801 cttctgcact gtgggtatcc tgctgcgtaa gctgcagagc aaccccagcc tggagggcgt
1861 gagccacgtc atcgtggatg aggtgcatga gcgggacgtg aacacagact ttctgctgat
1921 cctgctcaag ggcctgcagc ggctcaaccc ggccctgcgg ctggtgctca tgagtgccac
1981 aggggacaat gagcgcttct cccgatactt tggtggctgc cccgtcatca aggtgcctgg
2041 cttcatgtac ccagtcaagg agcactacct agaggacatc ctggccaagt tgggcaagca
2101 ccagtacctg caccggcacc ggcaccatga gtctgaggat gaatgcgcac tcgatttgga
2161 ccttgtgact gatctggttc tgcacatcga tgctcgcggg gaaccaggtg ggatcctgtg
2221 cttcctgcct gggtggcagg agatcaaagg agtgcagcag cgcctccagg aggccctggg
2281 catgcacgag agcaagtacc tcatcctgcc agtgcactcc aacatcccca tgatggatca
2341 gaaggccata ttccagcagc ctccagttgg ggtgcgcaag attgtcttgg ccaccaacat
2401 tgctgagact tccatcacaa tcaatgacat cgtgcatgtg gtggacagtg ggctgcacaa
2461 ggaagaacgc tatgacctga agaccaaggt gtcctgcctg gagacagtgt gggtatcaag
2521 agccaatgtg atccagcgcc ggggccgggc gggccgctgc cagtccggct ttgcctacca
2581 cttgttccct cgaagccggc tggagaaaat ggtccctttc caagtgccag agatcctgcg
2641 cacacctctt gagaacctgg tgctgcaagc gaaaatccac atgcctgaga agacggcggt
2701 ggagttcctg tccaaggctg tggacagtcc aaacatcaag gcagtggacg aggctgtgat
2761 cttgctccag gagatcgggg tgctggacca gcgggagtac ctgactaccc tggggcagcg
2821 cctggctcac atctccaccg acccccggtt ggccaaggcc attgtgttgg ctgccatctt
2881 ccgttgcctg cacccactac tggtggtcgt ttcctgcctc acccgggacc ccttcagcag
2941 cagcctacag aaccgggcag aggtggacaa ggtgaaagca ctgttgagcc atgacagcgg
3001 cagtgaccac ctggcctttg tgcgggctgt cgccggctgg gaggaggtgc tgcgttggca
3061 ggaccgcagc tcccgggaga attacctgga ggaaaacctg ctgtacgcac ccagcctgcg
3121 cttcatccac ggactcatca agcagttctc agagaacatt tatgaggcct tcctggtggg
3181 gaagccctcg gactgcaccc tggcctccgc ccagtgcaac gagtacagtg aggaggagga
3241 gctggtgaag ggcgtgctga tggccggcct ctaccccaac ctcatccagg tgaggcaggg
3301 caaggtcacc cggcagggga agttcaagcc caacagcgtc acatatagga ccaaatcagg
3361 caacatcctg ctgcacaagt cgaccattaa cagggaggcc acacggttac ggagccgatg
3421 gctgacgtat ttcatggcag tcaagtccaa tggcagcgtc ttcgtccggg actcctctca
3481 ggtgcacccg ctagctgtgc tgctgctgac cgacggggac gtgcacatcc gtgatgacgg
3541 gcgccgggcc accatctcac tgagcgacag tgacctgctg cggctggagg gtgactcgcg
3601 taccgtgcgg ctgctgaagg agctgcggcg ggccctgggc cgcatggtgg agcggagcct
3661 gcgcagcgag ctggctgcac ttccccccag cgtacaggag gagcacgggc agctgcttgc
3721 gctactggca gagctgctgc gaggaccctg tggcagcttt gatgtgcgca agacagctga
3781 cgactgagcc ctgcttctgc tggggctgtg tacagagtgc aaatgtttat ttaaaataaa
3841 gttctattta tcccttgtga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3901 aaaaaaaaaa aaaaa
//