LOCUS BC038405 2170 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens mucin-like protocadherin, mRNA (cDNA clone MGC:34114
IMAGE:5185584), complete cds.
ACCESSION BC038405
VERSION BC038405.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2170)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2170)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: f Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13929444.
FEATURES Location/Qualifiers
source 1..2170
/db_xref="H-InvDB:HIT000095193"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34114 IMAGE:5185584"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2170
/gene="MUPCDH"
/gene_synonym="MU-PCDH"
/db_xref="GeneID:53841"
/db_xref="HGNC:HGNC:7521"
/db_xref="MIM:606839"
CDS 23..1978
/gene="MUPCDH"
/gene_synonym="MU-PCDH"
/codon_start=1
/product="mucin-like protocadherin"
/protein_id="AAH38405.1"
/db_xref="GeneID:53841"
/db_xref="HGNC:HGNC:7521"
/db_xref="MIM:606839"
/translation="MGSWALLWPPLLFTGLLVRPPGTMAQAQYCSVNKDIFEVEENTN
VTEPLVDIHVPEGQEVTLGALSTPFAFRIQGNQLFLNVTPDYEEKSLLEAQLLCQSGG
TLVTQLRVFVSVLDVNDNAPEFPFKTKEIRVEEDTKVNSTVIPETQLQAEDRDKDDIL
FYTLQEMTAGASDYFSLVSVNRPALRLDRPLDFYERPNMTFWLLVRDTPGENVEPSHT
ATATLVLNVVPADLRPPWFLPCTFSDGYVCIQAQYHGAVPTGHILPSPLVLRPGPIYA
EDGDRGINQPIIYSIFRGNVNGTFIIHPDSGNLTVARSVPSPMTFLLLVKGQQADLAR
YSVTQVTVEAVAAAGSPPRFPQRLYRGTVARGAGAGVVVKDAAAPSQPLRIQAQDPEF
SDLNSAITYRITNHSHFRMEGEVVLTTTTLAQAGAFYAEVEAHNTVTSGTATTVIEIQ
VSEQEPPSTGGGPSEDKRFSVVDMAALGGVLGALLLLALLGLAVLVHKHYGPRLKCCS
GKAPEPQPQGFDNQAFLPDHKANWAPVPSPTHDPKPAEAPMPAEPAPPGPASPGGAPE
PPAAARAGGSPTAVRSILTKERRPEGGYKAVWFGEDIGTEADVVVLNAPTLDVDGASD
SGSGDEGEGAGRGGGPYDAPGGDDSYI"
BASE COUNT 490 a 708 c 620 g 352 t
ORIGIN
1 ctgccaggtg acagccgcca agatggggtc ttgggccctg ctgtggcctc ccctgctgtt
61 caccgggctg ctcgtccgac ccccggggac catggcccag gcccagtact gctctgtgaa
121 caaggacatc tttgaagtag aggagaacac aaatgtcacc gagccgctgg tggacatcca
181 cgtcccggag ggccaggagg tgaccctcgg agccttgtcc accccctttg catttcggat
241 ccagggaaac cagctgtttc tcaacgtgac tcctgattac gaggagaagt cactgcttga
301 ggctcagctg ctgtgtcaga gcggaggcac attggtgacc cagctaaggg tgttcgtgtc
361 agtgctggac gtcaatgaca atgcccccga attccccttt aagaccaagg agataagggt
421 ggaggaggac acgaaagtga actccaccgt catccccgag acgcaactgc aggctgagga
481 ccgcgacaag gacgacattc tgttctacac cctccaggaa atgacagcag gtgccagtga
541 ctacttctcc ctggtgagtg taaaccgtcc cgccctgagg ctggaccggc ccctggactt
601 ctacgagcgg ccgaacatga ccttctggct gctggtgcgg gacactccgg gggagaatgt
661 ggaacccagc cacactgcca ccgccacact agtgctgaac gtggtgcccg ccgacctgcg
721 gcccccgtgg ttcctgccct gcaccttctc agatggctac gtctgcattc aagctcagta
781 ccacggggct gtccccacgg ggcacatact gccatctccc ctcgtcctgc gtcccggacc
841 catctacgct gaggacggag accgcggcat caaccagccc atcatctaca gcatctttag
901 gggaaacgtg aatggtacat tcatcatcca cccagactcg ggcaacctca ccgtggccag
961 gagtgtcccc agccccatga ccttccttct gctggtgaag ggccaacagg ccgaccttgc
1021 ccgctactca gtgacccagg tcaccgtgga ggctgtggct gcggccggga gcccgccccg
1081 cttcccccag agactgtatc gtggcaccgt ggcgcgtggc gctggagcgg gcgttgtggt
1141 caaggatgca gctgcccctt ctcagcctct gaggatccag gctcaggacc cggagttctc
1201 ggacctcaac tcggccatca catatcgaat taccaaccac tcacacttcc ggatggaggg
1261 agaggttgtg ctgaccacca ccacactggc acaggcggga gccttctacg cagaggttga
1321 ggcccacaac acggtgacct ctggcaccgc aaccacagtc attgagatac aagtttccga
1381 acaggagccc ccctccacag gtggcggccc ctcggaggac aagcgcttct cggtggtgga
1441 tatggcggcc ctgggcgggg tgctgggtgc gctgctgctg ctggctctcc ttggcctcgc
1501 cgtccttgtc cacaagcact atggcccccg gctcaagtgc tgctctggca aagctccgga
1561 gccccagccc caaggctttg acaaccaggc gttcctccct gaccacaagg ccaactgggc
1621 gcccgtcccc agccccacgc acgaccccaa gcccgcggag gcaccgatgc ccgcagagcc
1681 cgcacccccc ggccctgcct ccccaggcgg tgcccctgag ccccccgcag cggcccgagc
1741 tggcggaagc cccacggcgg tgaggtccat cctgaccaag gagcggcggc cggagggcgg
1801 gtacaaggct gtctggtttg gcgaggacat cgggacggag gcagacgtgg tcgttctcaa
1861 cgcgcccacc ctggacgtgg atggcgccag tgactccggc agcggcgatg agggcgaggg
1921 cgcggggagg ggtgggggtc cctacgatgc gcccggtggt gatgactcct acatctaagt
1981 ggcccctcca ccctctcccc cagccgcacg ggcactggag gtctcgctcc cccagcctcc
2041 gacccgaggc agaataaagc aaggctcccg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2161 aaaaaaaaaa
//