LOCUS BC037302 1968 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens retinol dehydrogenase 11 (all-trans/9-cis/11-cis),
mRNA (cDNA clone MGC:33738 IMAGE:5261204), complete cds.
ACCESSION BC037302
VERSION BC037302.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1968)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1968)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-SEP-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: f Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20070271.
FEATURES Location/Qualifiers
source 1..1968
/db_xref="H-InvDB:HIT000051899"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33738 IMAGE:5261204"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1968
/gene="RDH11"
/gene_synonym="ARSDR1"
/gene_synonym="CGI-82"
/gene_synonym="FLJ32633"
/gene_synonym="HCBP12"
/gene_synonym="MDT1"
/gene_synonym="PSDR1"
/gene_synonym="RALR1"
/gene_synonym="SCALD"
/db_xref="GeneID:51109"
/db_xref="HGNC:HGNC:17964"
/db_xref="MIM:607849"
CDS 68..1024
/gene="RDH11"
/gene_synonym="ARSDR1"
/gene_synonym="CGI-82"
/gene_synonym="FLJ32633"
/gene_synonym="HCBP12"
/gene_synonym="MDT1"
/gene_synonym="PSDR1"
/gene_synonym="RALR1"
/gene_synonym="SCALD"
/codon_start=1
/product="retinol dehydrogenase 11
(all-trans/9-cis/11-cis)"
/protein_id="AAH37302.1"
/db_xref="GeneID:51109"
/db_xref="HGNC:HGNC:17964"
/db_xref="MIM:607849"
/translation="MVELMFPLLLLLLPFLLYMAAPQIRKMLSSGVCTSTVQLPGKVV
VVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLS
DTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLL
LEKLKESAPSRIVNVSSLAHHLGRIHFHNLQGEKFYNAGLAYCHSKLANILFTQELAR
RLKGSGVTTYSVHPGTVQSELVRHSSFMRWMWWLFSFFIKTPQQGAQTSLHCALTEGL
EILSGNHFSDCHVAWVSAQARNETIARRLWDVSCDLLGLPID"
BASE COUNT 572 a 453 c 470 g 473 t
ORIGIN
1 agcgggaagc catagtcggc gagcaacgct ggagcatccc gctctggtgc cgctgcagcc
61 ggcagagatg gttgagctca tgttcccgct gttgctcctc cttctgccct tccttctgta
121 tatggctgcg ccccaaatca ggaaaatgct gtccagtggg gtgtgtacat caactgttca
181 gcttcctggg aaagtagttg tggtcacagg agctaataca ggtatcggga aggagacagc
241 caaagagctg gctcagagag gagctcgagt atatttagct tgccgggatg tggaaaaggg
301 ggaattggtg gccaaagaga tccagaccac gacagggaac cagcaggtgt tggtgcggaa
361 actggacctg tctgatacta agtctattcg agcttttgct aagggcttct tagctgagga
421 aaagcacctc cacgttttga tcaacaatgc aggagtgatg atgtgtccgt actctaagac
481 agcagatggc tttgagatgc acataggagt caaccacttg ggtcacttcc tcctaaccca
541 tctgctgcta gagaaactaa aggaatcagc cccatcaagg atagtaaatg tgtcttccct
601 cgcacatcac ctgggaagga tccacttcca taacctgcag ggcgagaaat tctacaatgc
661 aggcctggcc tactgtcaca gcaagctagc caacatcctc ttcacccagg aactggcccg
721 gagactaaaa ggctctggcg ttacgacgta ttctgtacac cctggcacag tccaatctga
781 actggttcgg cactcatctt tcatgagatg gatgtggtgg cttttctcct ttttcatcaa
841 gactcctcag cagggagccc agaccagcct gcactgtgcc ttaacagaag gtcttgagat
901 tctaagtggg aatcatttca gtgactgtca tgtggcatgg gtctctgccc aagctcgtaa
961 tgagactata gcaaggcggc tgtgggacgt cagttgtgac ctgctgggcc tcccaataga
1021 ctaacaggca gtgccagttg gacccaagag aagactgcag cagactacac agtacttctt
1081 gtcaaaatga ttctccttca aggttttcaa aacctttagc acaaagagag caaaaccttc
1141 cagccttgcc tgcttggtgt ccagttaaaa ctcagtgtac tgccagattc gtctaaatgt
1201 ctgtcatgtc cagatttact ttgcttctgt tactgccaga gttactagag atatcataat
1261 aggataagaa gaccctcata tgacctgcac agctcatttt ccttctgaaa gaaactacta
1321 cctaggagaa tctaagctat agcagggatg atttatgcaa atttgaacta gcttctttgt
1381 tcacaattca gttcctccca accaaccagt cttcacttca agagggccac actgcaacct
1441 cagcttaaca tgaataacaa agactggctc aggagcaggg cttgcccagg catggtggat
1501 caccggaggt cagtagttca agaccagcct ggccaacatg gtgaaacccc acctctacta
1561 aaaattgtgt atatctttgt gtgtcttcct gtttatgtgt gccaagggag tattttcaca
1621 aagttcaaaa cagccacaat aatcagagat ggagcaaacc agtgccatcc agtctttatg
1681 caaatgaaat gctgcaaagg gaagcagatt ctgtatatgt tggtaactac ccaccaagag
1741 cacatgggta gcagggaaga agtaaaaaaa gagaaggaga atactggaag ataatgcaca
1801 aaatgaaggg actagttaag gattaactag ccctttaagg attaactagt taaggattaa
1861 tagcaaaaga tattaaatat gctaacatag ctatggagga attgagggca agcacccagg
1921 actgatgagg tcttaacaaa aaccagtgtg caaaaaaaaa aaaaaaaa
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