LOCUS BC036895 2005 bp mRNA linear HUM 02-JUL-2005
DEFINITION Homo sapiens AF4/FMR2 family, member 3, mRNA (cDNA clone
IMAGE:5498133), partial cds.
ACCESSION BC036895
VERSION BC036895.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2005)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2005)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 78 Row: n Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504938.
FEATURES Location/Qualifiers
source 1..2005
/db_xref="H-InvDB:HIT000094690"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5498133"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2005
/gene="AFF3"
/gene_synonym="MLLT2-like"
/db_xref="GeneID:3899"
/db_xref="MIM:601464"
CDS 182..>2005
/gene="AFF3"
/gene_synonym="MLLT2-like"
/codon_start=1
/product="AFF3 protein"
/protein_id="AAH36895.1"
/db_xref="GeneID:3899"
/db_xref="MIM:601464"
/translation="MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRNQETQQDDG
TFNSSYSLFSEPYKTNKGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQ
TPVNKIDEHFVADSRAQNQPSSICSTTTSTPAAVPVQQSKRGTMGWQKAGHPPSDGQQ
RATQQGSLRTLLGDGVGRQQPRAKQVCNVEVGLQTQERPPAMAAKHSSSGHCVQNFPP
SLASKPSLVQQKPTAYVRPMDGQDQAPDESPKLKSSSETSVHCTSYRGVPASKPEPAR
AKAKLSKFSIPKQGEESRSGETNSCVEEIIREMTWLPPLSAIQAPGKVEPTKFPFPNK
DSQLVSSGHNNPKKGDAEPESPDNGTSNTSMLEDDLKLSSDEEENEQQAAQRTALRAL
SDSAVVQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGSDSETESSSSESEGSKP
PHFSSPEAEPASSNKWQLDKWLNKVNPHKPPILIQNESHGSESNQYYNPVKEDVQDCG
KVPDVCQPSLREKEIKSTCKEEQRPRTANKAPGSKGVKQKSPPAAVAVAVSAAAPPPA
VPCAPAENAPAPARRSAGKKPTRRTERTSAGDGANCHRPEEP"
BASE COUNT 541 a 591 c 555 g 318 t
ORIGIN
1 ccacgcgtcc ggaaagaaaa ggaacgggag ctgagagctg atcacctgcc tttccagacc
61 ggagacgggc ggcaagtttg aagtcgacac ccagaggcca gtttgtcccc cttcccgcgc
121 gcgggcggcc cgagcctcgg cggcggcggt agcggcggcg gcgacgctga cacctcccac
181 catggacagc ttcgacttag ccctgctcca ggaatgggac ctcgagtcac tgtgtgtcta
241 tgaaccagat agaaatgcat tacggaggaa agaacgagaa agaagaaatc aagaaactca
301 acaggatgat ggcacgttta attctagtta ctctctcttc agtgagccct acaagactaa
361 caagggggat gaactctcca accggatcca gaacacttta ggcaattatg atgaaatgaa
421 agacttttta actgatagat ccaatcagag tcatctcgtt ggagttccca aacctggggt
481 tcctcagact cctgtgaaca agatcgatga acattttgtt gcagattcaa gagcccagaa
541 ccagccctcg tctatctgta gcactacaac ttccacacca gcagctgtcc ccgtgcagca
601 gagtaagaga ggcactatgg gctggcagaa ggctgggcac ccaccctctg acggccaaca
661 gagagcaaca caacagggct ctctcaggac cttgcttgga gatggtgttg gcagacagca
721 gcctcgggcc aaacaagtgt gcaatgtgga ggtgggcctt cagacccagg agaggccacc
781 tgccatggcg gccaagcaca gcagcagcgg acactgtgtt cagaactttc ctccatccct
841 agcttcaaaa cccagcctgg tccagcagaa accgaccgcg tatgtgaggc caatggacgg
901 ccaagatcag gcccctgatg agtctcctaa gctgaagtcg tcttcggaaa ccagcgtgca
961 ctgcacatca tacaggggag tccctgccag caagccggag cctgccagag ccaaggccaa
1021 gctctccaag ttcagcatcc ccaagcaggg ggaggagagt agatctggag aaaccaacag
1081 ctgtgttgaa gaaataatcc gggagatgac ctggcttcca ccactttctg ctattcaagc
1141 acctggcaaa gtggaaccaa ccaaatttcc atttccaaat aaggactctc agcttgtatc
1201 ctctggacac aataatccaa agaaaggtga tgcagagcca gagagtccag acaatggcac
1261 atcgaataca tcaatgctgg aagatgacct taagctaagc agtgatgaag aggagaatga
1321 acagcaggca gctcagagaa cggctctccg cgctctctct gacagcgccg tggtccagca
1381 gcccaactgc agaacctcgg tgccttccag caagggcagc agcagcagca gcagcagcgg
1441 cagcagcagc tcctccagcg actcagagag cagctccgga tctgactcgg agaccgagag
1501 cagctccagc gagagtgagg gcagcaagcc cccccacttc tccagccccg aggctgaacc
1561 ggcatcctct aacaagtggc agctggataa atggctaaac aaagttaatc cccacaagcc
1621 tcctattctg atccaaaatg aaagccacgg gtcagagagc aatcagtact acaacccggt
1681 gaaagaggac gtccaggact gtgggaaagt ccccgacgtt tgccagccca gcctgagaga
1741 gaaggagatc aagagcactt gcaaggagga gcaaaggcca aggacagcca acaaggcccc
1801 tgggagtaaa ggcgtgaagc agaagtcccc gcccgcggcc gtggccgtgg cggtgagcgc
1861 agccgccccg ccacccgcag tgccctgtgc gcccgcggag aacgcgcccg cgcctgcccg
1921 gaggtccgcg ggcaagaagc ccaccaggcg caccgagagg acctcagccg gggacggcgc
1981 caactgccac cggcccgagg agccc
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