LOCUS BC036831 4501 bp mRNA linear HUM 06-APR-2004
DEFINITION Homo sapiens AT rich interactive domain 5B (MRF1-like), mRNA (cDNA
clone IMAGE:5529276), partial cds.
ACCESSION BC036831
VERSION BC036831.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4501)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4501)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 78 Row: o Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..4501
/db_xref="H-InvDB:HIT000094640"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5529276"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..4501
/gene="ARID5B"
/gene_synonym="FLJ21150"
/gene_synonym="MRF2"
/db_xref="GeneID:84159"
/db_xref="MIM:608538"
CDS <1..2151
/gene="ARID5B"
/gene_synonym="FLJ21150"
/gene_synonym="MRF2"
/codon_start=1
/product="ARID5B protein"
/protein_id="AAH36831.1"
/db_xref="GeneID:84159"
/db_xref="MIM:608538"
/translation="PRVRTLISQKSIPEPLPAADMKKKIEGYQEFSAKPLASRVDPEK
DNETDQGSNSEKVAEEAGEKGPTPPLPSAPLAPEKDSALVPGASKQPLTSPSALVDSK
QESKLCCFTESPESEPQEASFPSFPTTQPPLANQNETEDDKLPAMADYIANCTVKVDQ
LGSDDIHNALKQTPKVLVVQSFDMFKDKDLTGPMNENHGLNYTPLLYSRGNPGIMSPL
AKKKLLSQVSGASLSSSYPYGSPPPLISKKKLIARDDLCSSLSQTHHGQSTDHMAVSR
PSVIQHVQSFRSKPSEERKTINDIFKHEKLSRSDPHRCSFSKHHLNPLADSYVLKQEI
QEGKDKLLEKRALPHSHMPSFLADFYSSPHLHSLYRHTEHHLHNEQTSKYPSRDMYRE
SENSSFPSHRHQEKLHVNYLTSLHLQDKKSAAAEAPTDDQPTDLSLPKNPHKPTGKVL
GLAHSTTGPQESKGISQFQVLGSQSRDCHPKACRVSPMTMSGPKKYPESLSRSGKPHH
VRLENFRKMEGMVHPILHRKMSPQNIGAARPIKRSLEDLDLVIAGKKARAVSPLDPSK
EVSGKEKASEQESEGSKAAHGGHSGGGSEGHKLPLSSPIFPGLYSGSLCNSGLNSRLP
AGYSHSLQYLKNQTVLSPLMQPLAFHSLVMQRGIFTSPTNSQQLYRHLAAATPVGSSY
GDLLHNSIYPLAAINPQAAFPSSQLSSVHPSTKL"
BASE COUNT 1288 a 1097 c 995 g 1121 t
ORIGIN
1 ccacgcgtcc ggactttaat aagccagaaa agcatccctg agcctctccc agcagcagac
61 atgaagaaaa aaatagaagg gtatcaggaa ttttcagcga agcccctggc atccagagta
121 gacccagaga aggacaacga aacagaccaa ggttccaaca gtgagaaggt ggcagaggag
181 gcgggagaga aggggcccac acctccactc ccaagtgctc ctctggcccc agaaaaagat
241 tcagccttgg tccctggggc cagcaaacag ccactcacct ctcctagtgc cctggtggac
301 tcaaaacaag aatccaaact gtgctgtttt acagagagcc ctgaaagtga accccaagaa
361 gcatccttcc ccagcttccc caccacacag ccaccgctgg caaaccagaa tgagacggag
421 gatgacaaac tgcccgccat ggcagattac attgccaact gcaccgtgaa ggtggaccag
481 ctgggcagtg acgacatcca caatgcgctc aagcagaccc caaaggtcct tgtggtccag
541 tcgtttgaca tgttcaaaga caaagacctg actgggccca tgaacgagaa ccatggactt
601 aattacacgc ccctgctcta ctctaggggc aacccaggca tcatgtcccc actggccaag
661 aaaaagcttt tgtcccaagt gagtggggcc agcctctcca gcagctaccc ttatggctcc
721 ccaccccctt tgatcagcaa aaagaaactg attgctaggg atgacttgtg ttccagtttg
781 tcccagaccc accatggcca aagcactgac catatggcgg tcagccggcc atcagtgatt
841 cagcacgtcc agagtttcag aagcaagccc tcggaagaga gaaagaccat caatgacatc
901 tttaagcatg agaaactgag tcgatcagat ccccaccgct gcagcttctc caagcatcac
961 cttaaccccc ttgctgactc ctacgtcctg aagcaagaaa ttcaggaggg caaggataaa
1021 ctcttagaga aaagggccct cccccattcc cacatgccta gcttcctggc tgacttctac
1081 tcgtcccctc atctccatag cctctacaga cacaccgagc accatcttca taatgaacag
1141 acatccaaat acccttccag ggacatgtac agggaatcgg aaaacagttc ttttccttcc
1201 cacagacacc aagaaaagct ccatgtaaat tatctcacgt ccctgcacct gcaagacaaa
1261 aagtcggcgg cagcagaagc ccctacggat gatcagccta cagatctgag ccttcccaag
1321 aacccgcaca aacctaccgg caaggtcctg ggcctggctc attccaccac agggccccag
1381 gagagcaaag gcatctccca gttccaggtc ttaggcagcc agagtcgaga ctgtcacccc
1441 aaagcctgtc gggtatcacc catgaccatg tcaggcccta aaaaataccc tgaatcgctt
1501 tcaagatcag gaaaacctca ccatgtgaga ctggagaatt tcaggaagat ggaaggcatg
1561 gtccacccaa tcctgcaccg gaaaatgagc ccgcagaaca ttggggcggc gcggccgatc
1621 aagcgcagcc tggaggattt ggaccttgtg attgcaggga aaaaggcccg ggcagtgtct
1681 cccttagacc catccaagga ggtctctggg aaggagaagg cctctgagca ggagagtgaa
1741 ggcagcaaag cagcgcacgg tgggcattcc gggggcggat cagaaggcca caagcttccc
1801 ctctcctccc ctatcttccc aggtctgtat tccgggagcc tgtgtaactc gggcctcaac
1861 tccaggctcc cggctgggta ttctcattct ctgcagtact tgaaaaacca gactgtgctt
1921 tctccactca tgcagcccct ggctttccac tcgcttgtga tgcaaagagg aatttttaca
1981 tcaccgacaa attctcagca gctgtacaga cacttggctg cggctacacc tgtaggaagt
2041 tcatatgggg accttttgca taacagcatt taccctttag ctgctataaa tcctcaagct
2101 gcctttccat cttcccagct gtcatccgtg caccccagta caaaactgta ggctcagctc
2161 tgcccagcag tccaaagcgg catggccaac agagcttcac tccttaccca ggagtgctgg
2221 cttatagagt tagaagtcag tatttcttct aatctgaggc tatgatcagt cccagctgta
2281 ggggcccaga ggggaggtga acatgcctga tttttgtggg acaactgtag cccacaaact
2341 gactggctgg tgagtcttga ctcccttcca acacagatgc ccaggcacct ccagatcatt
2401 cacttcgcac gtgggccttg tgaagggatt tgtgaatatc caggaagaac ttagaggacc
2461 ccatctgagt tcggatggtc aggaaacaat ctgggcaaaa aagaggcagg catttcaaag
2521 gaaggggcaa ggaagactgg caaacagatg gcaagggatg cccctctttt tcataaaact
2581 ctccaaggtt caatcaatgc aatgtatagt gaaacttcaa tagatctttc attttgacac
2641 tattaaacaa tccagagaag taaacactgt taaattgact gtatatattt gcttcttaaa
2701 actacctgta tcactgtttg ctcacctaat ttatatacag gtagttccat tttctcccag
2761 ttccttctcg tctttttttt tttttttttt tttattaaat ggtattgctt ttgtttgcag
2821 gtctttttgt ttttgttttg tttttgaggc tgactgactg tcctagttgt tgtgtgtttg
2881 taatttttcc acatcttatt ttgagcagct ttgggtggta aagttattgt ttacaaattg
2941 aagcaactga ttctagtgga acaaatgaaa aagaaacagt caagcacaca atagtgcaaa
3001 gaacgttcct ttgtagatcc gcaacttaag gattttgttc ctcataaatg gcatagttga
3061 aagagcttat acactgctta cccagccaaa tgctttgctt tgaagtattg ggttctgtga
3121 aaatattgag cattgtactt accttatcta ggctgtgaaa ctgtcctaca taccagagaa
3181 tcataaaaac aaaaacctca ctggcagcaa gctgccgaat aacaacagag tctagaggac
3241 atatttgtgg gctgcacaga tattttagga atttcagaaa ttagaacagg agccaaaatg
3301 atttacattg gcgttggcac tgattccttt aaatggtctg ggaaaggggg ttgggaagag
3361 gatggagctc aactggccag aagaggagca gctgcagtcc tgatagcttc tctagcctcg
3421 gtcttttgag tgataagtag tcatgttgtt ttcatccagt tggtttcttg tcattcccaa
3481 gaagaatctc ccaggccaca tctttgggga taactgacat actggattag ccttttcaaa
3541 agaaaagtca tcctatttgg ttttatgggg tgtgagtttt gtgtgtacac acacagaaac
3601 atgtaaggtg gtttgggtca tgtttttaac cacctggcaa tacagtccac tttctggttt
3661 cttttattgt gggaagtaaa tggtcaagct gctcaggcag tgaaaagatg tggagaatgt
3721 ccgttgtcat tcttgccact gtattccatt tgctaccgag atataacatt aaggtggaca
3781 cattttctaa ctgtattaat taaaagtcaa tggatacaga gagtggattt tctccccaag
3841 tcccatccct gctgaagacc gcttggatga actccccaac ccactgtgcc cctcccgcaa
3901 cactaccagt agactttaga accatagtta actaagtctt ttacctctga gatacttaat
3961 tctgggaaaa ttggtgacaa ttttcaactt ctaaataggt aactcgactg caaaataatc
4021 aaaactgata acaatgaaac tgcggctctt aaacaaagcc atgcatgccg tgcatttgta
4081 ttgaaatgtc tccatgatat gaagccaaat attcaatgta acatacttaa tatccaaagg
4141 tggaaacaaa agaatgtaga gatccagtgt taagagttcc atttgcttca attaattatt
4201 taccttcctg tggaataata tatatatata tatttaatag aaccatagat agactagtag
4261 aatttagatt ataaatgtgt gagtgcagat tatcctgcta ttgcacaagc tagagggggg
4321 aaaaatctca attccagcta gcaagatgct agccaggaca catataagaa agttgcacta
4381 gattgaatgg tcacagaatc ggaggacatg gaagaaaaag gaaacttcgg tggttctgca
4441 gcagacatgg gctaggtcat atgtggtttc tatgagttcg tgtctcaaaa aaaaaaaaaa
4501 a
//