LOCUS BC036812 3000 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase-like 1, mRNA (cDNA clone
MGC:46275 IMAGE:5734009), complete cds.
ACCESSION BC036812
VERSION BC036812.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3000)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3000)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 79 Row: j Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 71043691.
FEATURES Location/Qualifiers
source 1..3000
/db_xref="H-InvDB:HIT000094626"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:46275 IMAGE:5734009"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_124"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3000
/gene="GALNTL1"
/gene_synonym="GALNT16"
/db_xref="GeneID:57452"
/db_xref="HGNC:HGNC:23233"
CDS 79..1755
/gene="GALNTL1"
/gene_synonym="GALNT16"
/codon_start=1
/product="UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase-like 1"
/protein_id="AAH36812.2"
/db_xref="GeneID:57452"
/db_xref="HGNC:HGNC:23233"
/translation="MRKIRANAIAILTVAWILGTFYYLWQDNRAHAASSGGRGAQRAG
RRSEQLREDRTIPLIVTGTPSKGFDEKAYLSAKQLKAGEDPYRQHAFNQLESDKLSPD
RPIRDTRHYSCPSVSYSSDLPATSVIITFHNEARSTLLRTVKSVLNRTPANLIQEIIL
VDDFSSDPEDCLLLTRIPKVKCLRNDRREGLIRSRVRGADVAAATVLTFLDSHCEVNT
EWLPPMLQRVKEDHTRVVSPIIDVISLDNFAYLAASADLRGGFDWSLHFKWEQIPLEQ
KMTRTDPTRPIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENFELSFRVWMCGGS
LEIVPCSRVGHVFRKRHPYNFPEGNALTYIRNTKRTAEVWMDEYKQYYYEARPSAIGK
AFGSVATRIEQRKKMNCKSFRWYLENVYPELTVPVKEALPGIIKQGVNCLESQGQNTA
GDFLLGMGICRGSAKNPQPAQAWLFSDHLIQQQGKCLAATSTLMSSPGSPVILQMCNP
REGKQKWRRKGSFIQHSVSGLCLETKPAQLVTSKCQADAQAQQWQLLPHT"
BASE COUNT 722 a 896 c 783 g 599 t
ORIGIN
1 tggggctgcg agcgcccccg ccccggcccc gagagcacgc cggcccagtc ccccacctgg
61 ggcgcccgtc tgcccaccat gaggaagatc cgcgccaatg ccatcgccat cctgaccgta
121 gcctggatcc tgggcacttt ctactactta tggcaggaca accgagccca cgcagcatcc
181 tccggcggcc ggggcgcgca gagggcaggc aggaggtcgg agcagctccg cgaggaccgc
241 accatcccgc tcattgtgac aggaactccc tcgaaaggct ttgatgagaa ggcctacctg
301 tcggccaagc agctgaaggc tggagaggac ccctacagac agcacgcctt caaccagctg
361 gagagtgaca agctgagccc agaccggccc atccgggaca cccgccatta cagctgccca
421 tctgtgtcct actcctcgga cctgccagcc accagcgtca tcatcacctt ccacaatgag
481 gcccgttcca ccctgctgcg cacagtgaag agtgtcctga accgaactcc tgccaacttg
541 atccaggaga tcattttagt ggatgacttc agctcagatc cggaagactg tctactcctg
601 accaggatcc ccaaggtcaa gtgcctgcgc aatgatcggc gggaagggct gatccggtcc
661 cgagtgcgtg gggcggacgt ggctgcagct accgttctca cctttctgga tagccactgc
721 gaagtgaaca ccgagtggct gccgcccatg ctgcagcggg tgaaggagga ccacacccgc
781 gtggtgagtc ccatcattga tgtcatcagt ctggataatt ttgcctacct tgcagcatct
841 gctgaccttc gtggagggtt cgactggagc ctgcatttca agtgggagca gatccctctt
901 gagcagaaga tgacccggac agaccccacc aggcccataa ggacgcctgt catagctgga
961 ggaatcttcg tgatcgacaa gtcctggttt aaccacttgg gaaagtatga tgcccagatg
1021 gacatctggg ggggagagaa ttttgagctc tccttcaggg tgtggatgtg tggtggcagt
1081 ctggagatcg tcccctgcag ccgggtgggc catgtcttca ggaaacggca cccctacaac
1141 ttccctgagg gtaatgccct cacctacatc aggaatacta agcgcactgc agaagtgtgg
1201 atggatgaat acaagcaata ctactatgag gcccggccct cggccatcgg gaaggccttc
1261 ggcagtgtgg ctacgcggat agagcagagg aagaagatga actgcaagtc cttccgctgg
1321 tacctggaga acgtctaccc agagctcacg gtccccgtga aggaagcact ccccggcatc
1381 attaagcagg gggtgaactg cttagaatct cagggccaga acacagctgg tgacttcctg
1441 cttggaatgg ggatctgcag agggtctgcc aagaacccgc agcccgccca ggcatggctg
1501 ttcagtgacc acctcatcca gcagcagggg aagtgcctgg ctgccacctc caccttaatg
1561 tcctcccctg gatccccagt catactgcag atgtgcaacc ctagagaagg caagcagaaa
1621 tggaggagaa aaggatcttt catccagcat tcagtcagtg gcctctgcct ggagacaaag
1681 cctgcccagc tggtgaccag caagtgtcag gctgacgccc aggcccagca gtggcagctg
1741 ttgccacaca catgacggag ggattttctt gaagggtcag ctattgcact gtgctgggag
1801 gctggctgtg gctcctgttt gtgaagagaa ctcccagttc cttttcacag ccgctgagaa
1861 cacatccaca catctacccc acggccttgt cttggaactg ctcctgctat ccccacaccc
1921 tgcttcctca ccccactggc tcttgggcaa atgactgttg gtaccaggac cctgggggtc
1981 tcccctacaa agcagaccag cctggggcag atatacctac cacaggagcc ccctgtcttt
2041 cataggccaa ggatccacat acccatagag ttcatggatt ctagagggtc taggaatctc
2101 ttgaaattgt ccctaaaata ctgcatgtgt gtgcatacat gcattttcct ggggaaaaag
2161 tccatggctt ctaaaagagg tccctgatcc ccaaagggcc tgaacctctg ctctggattg
2221 aagccactgt ctgcccaagc tgccaccccc taatcttcct ccctggcgtg ctcaaactgc
2281 catcgcctgc tccctccaca cggcccttgg ggtcagcagc caagtgtctg tggtccgcag
2341 cacctgctct ggagggctct ccagcagttt cgcctcctga ctctcaccag cgtcctctcg
2401 gcagcactcc cgtgcccaag tgcacccctc tggacttgcc agcgcaggcc ccttcgctcc
2461 cagggccatg ctttgcctgt cctctgtcgt gatgtttctt ccgcagccag gtgcagcctc
2521 agatcccctg ttcatctggg aagcctcctg ccacagctta ggacagaact gggcccaggg
2581 caaaggcctc tccccagagg atggactaga aggcctgggc cacactcggg catggacctt
2641 tggggctggg gagccggggc tgcgcctgtt gaatgtaaga ggactgctga ccagagggcc
2701 ttcaagaggg tctctctgtc ctttgctgtg gtcagatcag gctctgcact tatcagccgg
2761 tcctttgtgg caacgcagcc ctgttctgtt tttgcttttc ctcttcttga ccaaagcatg
2821 tgccactagc tgtccttgag gacctcgtct ttatgaaaca cacacctgga ataaaaccac
2881 ttcttacaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2941 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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