LOCUS BC036749 4250 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Rho guanine nucleotide exchange factor (GEF) 15, mRNA
(cDNA clone MGC:44868 IMAGE:5204409), complete cds.
ACCESSION BC036749
VERSION BC036749.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4250)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4250)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: n Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32307165.
FEATURES Location/Qualifiers
source 1..4250
/db_xref="H-InvDB:HIT000051792"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44868 IMAGE:5204409"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4250
/gene="ARHGEF15"
/gene_synonym="ARGEF15"
/gene_synonym="FLJ13791"
/gene_synonym="KIAA0915"
/gene_synonym="MGC44868"
/gene_synonym="Vsm-RhoGEF"
/db_xref="GeneID:22899"
/db_xref="HGNC:HGNC:15590"
/db_xref="MIM:608504"
CDS 111..2636
/gene="ARHGEF15"
/gene_synonym="ARGEF15"
/gene_synonym="FLJ13791"
/gene_synonym="KIAA0915"
/gene_synonym="MGC44868"
/gene_synonym="Vsm-RhoGEF"
/codon_start=1
/product="Rho guanine nucleotide exchange factor (GEF) 15"
/protein_id="AAH36749.1"
/db_xref="GeneID:22899"
/db_xref="HGNC:HGNC:15590"
/db_xref="MIM:608504"
/translation="MSAQSLPAATPPTQKPPRIIRPRPPSRSRAAQSPGPPHNGSSPQ
ELPRNSNDAPTPMCTPIFWEPPAASLKPPALLPPSASRASLDSQTSPDSPSSTPTPSP
VSRRSASPEPAPRSPVPPPKPSGSPCTPLLPMAGVLAQNGSASAPGTVRRLAVRFEGG
AEGRAQDADAPEPGLQARADVNGEREAPLTGSGSQENGAPDAGLACPPCCPCVCHTTR
PGLELRWVPVGGYEEVPRVPRRASPLRTSRSRPHPPSIGHPAVVLTSYRSTAERKLLP
PLKPPKPTRVRQDATIFGDPPQPDLDLLSEDGIQTGDSPDEAPQNTPPATVEGREEEG
LEVLKEQNWELPLQDEPLYQTYRAAVLSEELWGVGEDGSPSPANAGDAPTFPRPPGPR
NTLWQELPAVQASGLLDTLSPQERRMQESLFEVVTSEASYLRSLRLLTDTFVLSQALR
DTLTPRDHHTLFSNVQRVQGVSERFLATLLSRVRSSPHISDLCDVVHAHAVGPFSVYV
DYVRNQQYQEETYSRLMDTNVRFSAELRRLQSLPKCERLPLPSFLLLPFQRITRLRML
LQNILRQTEEGSSRQENAQKALGAVSKIIERCSAEVGRMKQTEELIRLTQRLRFHKVK
ALPLVSWSRRLEFQGELTELGCRRGGVLFASRPRFTPLCLLLFSDLLLITQPKSGQRL
QVLDYAHRSLVQAQQVPDPSGPPTFRLSLLSNHQGRPTHRLLQASSLSDMQRWLGAFP
TPGPLPCSPDTIYEDCDCSQELCSESSAPAKTEGRSLESRAAPKHLHKTPEGWLKGLP
GAFPAQLVCEVTGEHERRRHLRQNQRLLEAVGPSSGTPNAPPP"
BASE COUNT 967 a 1312 c 1145 g 826 t
ORIGIN
1 cctcgctcca aggggcagac aggacaggct gaaaatagca actggttcca aaaagataaa
61 ggggatgact ccagcagagc acctcactcc tttgaagagc acagaggaag atgtcagccc
121 agtcccttcc tgcagcaaca ccccccacgc agaagccccc tcggatcatc cgcccccgcc
181 ctccttctcg ttccagggct gcccagtccc cagggcctcc ccacaatggc tcctctccac
241 aagaactacc ccgaaactcc aatgatgcac caaccccaat gtgcaccccc atcttctggg
301 agcccccagc tgcatccctc aagccccctg ctcttttgcc cccctcagct tctagagcca
361 gcctcgactc ccagacttcc ccagactcac cttccagcac ccccacacct agtccagtgt
421 cccggcgctc cgcctcccca gaacctgctc cccggtctcc agtcccccca cccaagccgt
481 ctgggtcacc ctgcacgcct ctgctcccca tggctggagt cctggctcag aatggctctg
541 cctcagctcc tggcactgtg cggaggctgg ctgtcaggtt tgaagggggt gctgaaggcc
601 gggctcagga tgcagatgcc ccggagccag gtctccaagc gagagcagat gtgaatgggg
661 agagagaagc tcccctcacc gggagtgggt cccaggagaa cggtgctcca gatgctggcc
721 tggcctgccc tccctgctgc ccctgtgtct gccacaccac ccggcctggc ctggagctca
781 gatgggtgcc tgtggggggc tatgaggagg tccccagggt cccccgtcgg gcctccccgc
841 tgcggacctc tcgctcccgc ccccaccctc caagcatcgg tcaccctgcc gttgtcctca
901 catcctaccg ctccactgct gagcgcaaac tcctgccacc cctcaagcct cccaaaccaa
961 ctcgtgtcag gcaggatgcc accattttcg gggacccccc acagccagat cttgatctgc
1021 tttctgaaga tggaatccaa acaggggaca gtcctgatga agctcctcag aatactcctc
1081 cagcaactgt ggaggggagg gaagaggagg ggctagaggt gctgaaggag cagaattggg
1141 agctgcccct gcaggatgaa cctctgtacc agacctaccg agcagccgtg ctgtcagagg
1201 agctgtgggg ggtgggtgag gatgggagtc cttctccagc aaatgctgga gatgcaccca
1261 ccttcccacg accccctgga cctcgcaaca ccctgtggca ggagcttccg gctgtgcaag
1321 ccagcggtct tctggatacc ctcagccccc aggagaggcg catgcaggag agtcttttcg
1381 aggtggtgac gtccgaggct tcctacctgc gctccctgcg gctgctgacc gacaccttcg
1441 tgctgagcca ggcactccgg gacacgctca ccccccgtga tcaccacaca ctcttctcca
1501 atgtgcagcg agtccaggga gtcagcgagc ggtttctagc aacgctcctg tcccgtgtgc
1561 gctcttcccc ccacatcagc gacttgtgtg atgtggtgca tgcccacgct gtggggcctt
1621 tctcggtgta tgtggattat gtgcggaacc agcagtatca ggaggagacc tacagccgcc
1681 tcatggacac caacgtgcgc ttctccgccg agctgcgccg gctgcagagc ctccctaagt
1741 gtgagcggct cccgctgccg tccttcctgc tactgccctt ccagcgcatc acccggctgc
1801 gcatgctgct gcagaatatc ctgcgccaga cagaagaggg gtccagccgt caggagaatg
1861 cccagaaggc cctgggtgct gtcagcaaga tcatcgagcg ttgcagcgct gaggtggggc
1921 gcatgaagca gactgaagag ctgatccggc tcacccaaag gctgcgcttc cacaaagtca
1981 aggccctgcc cctggtctcc tggtcacggc gcctggaatt ccagggagag ctgactgagt
2041 tagggtgccg gagggggggc gtgctctttg cctcgcgccc ccgcttcacc cctctttgcc
2101 tgctgctctt tagcgacctg ctgctcatca ctcagcctaa gagtgggcag cggttacagg
2161 ttctggacta tgcccatcgc tccctggtcc aggcccagca ggttccggat ccatctggac
2221 cccctacctt ccgcctctcc cttctcagca accaccaggg ccgccccacc caccgactac
2281 tccaagcttc ttccctatca gacatgcagc gctggctggg agccttccca accccaggcc
2341 cccttccctg ctccccagac accatctatg aggactgtga ctgttcccag gaactgtgtt
2401 cagagtcgtc tgcacctgcc aagactgaag gacggagtct ggagtccagg gctgccccca
2461 aacacctgca caagacccct gaaggttggc tgaaggggct tcctggggcc ttccctgccc
2521 agctggtgtg tgaagtcaca ggggaacacg aaaggaggag gcaccttcgc cagaaccaga
2581 ggcttctcga ggctgttgga ccttcttcag gcacccccaa tgccccccca ccctaatgca
2641 ggctgaggag ggggcacatg ttgggagaca cctaccagtg tggcacggag agaacaaagc
2701 ccattcatcc attggattca ctgtcagtgg agatactacc tctcgtggca accatagaga
2761 tcgagcttca ggacagagca gccaatgaaa acggccgcct gaacccacag caataagaat
2821 gaatgaggat gccttgaatg tgtggccaat ggagacagag gcttagtgca gagcagccaa
2881 tgggtactga gctggctgag cctatggcca atgagtattc ctgctatgct cagggccaag
2941 gaagacaaat ctaggtcatg gcagttgaaa aagggcctca ttggagataa agtcctagga
3001 taaaattggg aacaggaatg agcaggaagc caatcagcca aagaaaatgg tgatctggac
3061 ccaagagacc agtagtcacc ctgcttgttt ctgcagcaat gactggtcct gtcttttgag
3121 tctgggaaat actagtttcc attcctggat gcttcctgtg ccctctcaag ccagttcttc
3181 tcttccagaa gaattcagag tatgtgtctc agaaaatctg tgtgtgtaca tgtgcatgtg
3241 tagatatgtg tgtatatgta tcaggaaagg cattctgctg actgtggtgt gtgtgtggtg
3301 attgtgctcc tgacccacaa atgactgagt gctccatttc ttcctttacc ccccattttt
3361 cctattattc gctccaagaa agatgctaag tctgagctcc agaagagact gtgctgggtg
3421 tggcttggca cccaggggat gagagccctg agctttgggt ctcttggagg ctagggttct
3481 gtggcagttg cagggcaatg ttatggagca gccaacggcc tggcagagga gcccaaggga
3541 ctgaagatgg ccagtagctg ggtcctgagg cccctgaagt ctgcagaccc ttctccttgc
3601 cccaaacact ggcctccata attcctgcct gcagatctcc caacttgaac tataatccac
3661 cagccagcct cagccttgag ctttggaacc acattagatc ctgcatctgg gtgaagaaac
3721 gggagctgtg gaccacaggc cagccagtga acctcctggg ctttcttgcc tttgtcctga
3781 tcctctcaca gaaacactgg gccaaacagt ggggagagat tggagagcgg gtgtggctgc
3841 ccaaccccat ccagagcatc tgcttccaga tgagccagtg cctcgcatga taccagagga
3901 ggcgagggac agagacagca aggcagacag tggctggcag gggggcccag gcccgggacg
3961 aggcctcccc ttcagctcag gcacagcaac ttgcccagga ctgacactgt caccctgact
4021 gcaggaggca cagggactcc gggagactca gagggcgaag agcactggca tttggcatgt
4081 ccatgacatt ggagactccc ctagcagggt gcctgacgtg tggggaaccc tcagtaaata
4141 gtggtgcatt tgtaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4201 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//