LOCUS BC036467 3913 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens Lix1 homolog (chicken), mRNA (cDNA clone MGC:33866
IMAGE:5264055), complete cds.
ACCESSION BC036467
VERSION BC036467.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3913)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3913)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC036467.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: h Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222285.
FEATURES Location/Qualifiers
source 1..3913
/db_xref="H-InvDB:HIT000051713"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33866 IMAGE:5264055"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3913
/gene="LIX1"
/db_xref="GeneID:167410"
/db_xref="HGNC:HGNC:18581"
/db_xref="MIM:610466"
CDS 160..1008
/gene="LIX1"
/codon_start=1
/product="Lix1 homolog (chicken)"
/protein_id="AAH36467.1"
/db_xref="GeneID:167410"
/db_xref="HGNC:HGNC:18581"
/db_xref="MIM:610466"
/translation="MDITLESLRHIIAQVLPHRDPALVFKDLNVVSMLQEFWESKQQQ
KAAFPSEGVVVYESLPAPGPPFVSYVTLPGGSCFGNFQCCLSRAEARRDAAKVALINS
LFNELPSRRITKEFIMESVQEAVASTSGTLDDADDPSTSVGAYHYMLESNMGKTMLEF
QELMTIFQLLHWNGSLKALRETKCSRQEVISYYSQYSLDEKMRSHMALDWIMKERDSP
GIVSQELRMALRQLEEARKAGQELRFYKEKKEILSLALTQICSDPDTSSPSDDQLSLT
ALCGYH"
BASE COUNT 1268 a 787 c 710 g 1148 t
ORIGIN
1 gaggggtctt tagattctgg gaaatgtctg attggcagat gttaaaaggg attccttggt
61 aatccagtgc atcaatgagc tgcagaaatt cagcccagga ctgcaagaat tcaggcatga
121 ggacactctg tacaggaggc tcacacaggc agacccaaga tggacataac cttggaatct
181 ctgagacaca tcattgccca agtcttgcct cacagagatc cggctctagt cttcaaagac
241 ttgaacgttg tgtcaatgtt acaggaattt tgggaaagca agcagcagca gaaggctgca
301 ttcccaagtg aaggtgtggt ggtctatgag tcactgccag ctcctgggcc tccctttgtg
361 agttacgtga ccctcccagg gggaagctgt tttggcaact ttcagtgctg cttaagtaga
421 gccgaggcca ggcgggatgc agctaaagtg gccctgatca actccctctt caatgagctg
481 ccctctcgca ggatcaccaa ggaattcatt atggaaagtg ttcaggaagc agtagcctcc
541 accagcggca ccttagatga tgcagatgac cccagcacca gtgttggggc ctatcactac
601 atgctggagt caaacatggg gaagactatg ctggagtttc aggagctgat gaccattttc
661 caactattgc actggaatgg aagcctaaaa gcccttcgtg aaacaaagtg ttcccgacag
721 gaagtcatct cctactattc tcagtattct ctagatgaaa agatgcgcag ccacatggcc
781 ctggactgga tcatgaagga gcgggactca ccaggaattg tctctcaaga gctacgaatg
841 gccctgaggc agttggagga agccaggaaa gcaggacaag aactacggtt ttacaaagaa
901 aagaaagaaa tattgagctt agccctgact cagatctgca gtgaccctga cacttcctca
961 cccagtgatg atcagctgag ccttacggcc ctgtgtggct atcactagca aggccaagcc
1021 ccgggtaccc tcagtgatgg cagaggccag attaacatta ggaatctcag tgcagaggtc
1081 ctcagaggct ccagcatctc tagtactacc tgaaggctct cctaaccctc tccacacatt
1141 ccatttacag agtatgagag tcgtaggacc cttacaagac ccaacaagcc actcgatgca
1201 tttttctatc acattctcaa tagttccagc tcaggatgaa aggatagaca caaaattgtt
1261 tgaaaaacat tttccaggcc tggctccaac ctaaagcctg actgtcacgt gccttgcttg
1321 attttatata tattgtttca agaatagtcc aatatagcat tccccaaatg aacagcagcc
1381 agaattaggt gaagtagcat gatagcagtg tttaaaaata cttaggatta aataaataat
1441 atggattgtt ttaaaaaata tccaaggatc agagtctctt tctaagcttt gtaagctaag
1501 caatagttta tgtcctacta gatacactgc aaactacagt ggggatttta tctggacatc
1561 ccaccatcaa agatcttgaa atagtaatag tatgaaaata ctagataaaa ttaatgttta
1621 aaatgttttt gtaacaataa tttttaaaac ccacactctt ccatatatgg ggataaatat
1681 cacctagaaa agtagcctca ctcttattcc tcaagaatta atatccaatg tttatgagtc
1741 ttgcaatcaa ttttgttcat ttttaatttg caaatcgata acctgaacta atttgttctt
1801 attttttgcc actgcaaaca tatatctaca gagagaaaaa ttaatggcat tttaaaggtt
1861 aaaacatttt gaaaaattat tagcatgtaa caaagaatgc ttgcatttga ttagtttcac
1921 cagcatttga gagaaggacc ctttagctct gtttgttgtt caagaacata agcaaccagt
1981 agctcaaatg tagtatcatt attaagttta agtcactgga atcttcttta aaggaaggat
2041 aagacattgc catctctatt taactcatcc atatgggtca atcaactgat tagaaaatca
2101 aaaaacaata aaaacttttt tttttttttt tttttagtag agacgggatt tcatcatgtt
2161 gcccaggctg gtcttgaact cctgggctca agccatctgc ctgcctccac ctcccaaaat
2221 gctgagatta caggtgtgag ccaccatgcc tggcctaaac taatttttag atagttcctg
2281 gtcactcaaa tttaagaatg tcagcaatgt caattttaaa tgctcatagg tctttccata
2341 tctgtaacat gaaaatgatt attctgcatt ttattcagta gtccaaatta aagaaaatgt
2401 ttttctcaat ttaaaataat ttctttttct tttgtttatg caagtgcata catgcttcac
2461 tgaaagcaaa accattataa ttacattaaa gtttataaaa tatgatattt taacctcata
2521 tctaataagt atgtacaaag gtaaccatca ctccttaaat ccacatgaaa actactgtaa
2581 ctgatcatgt attttggaat tagacttgat aataaaagat tatcatgtat cacatatctc
2641 acaccagggg aacaattagc tacataattg tcatacctta atatctttta aaggtaacag
2701 taattttcaa cacattttat tttaaaatat tattttaaca aaagttacat tcctctccac
2761 aatgaggcta aatgtcaccc acgaaagaac tttattccct tatattcctg aaaagaaatc
2821 agaattaaca tttttatgtt gaataaattt taaaatttag gaaatgttct atttaaagtt
2881 aatttctttc ataaagccat tactctttac attgtcattt ccaaaaagcc acaatttccc
2941 atgctggatg tgatgaaagt taggcacacc tttactgcat tagcagcctt tgacaatgac
3001 ttcctcaaac tgacaccatc ttaattagat gcagggacag ggatcagatg ggacaatatc
3061 aaatttactt tgtgccctac aagttaaaaa ctgcacccat tctgtaaatt gaatatagag
3121 gttctccctt ggccactgtc agcttttctt gactggccaa aactgcccat tcttcctgga
3181 atggtatgaa agcttcagca aaataaataa aagtcagaat ctttgctggt ccctttaatg
3241 ctgatttgat agtaaatcaa tttcagctga gacataaggg ctgtcagtct atcatataaa
3301 catctttaac tatagcctag agaaaagagg gttgaagagc aaagcagatt ttttttttcc
3361 ttttctatat cttgttctga acaacacact gtgataaagg ggactagagt ggaagattcc
3421 ctatttaaac acatgaagct ctgggtccta gccttttttg gttataagcc ctttgagaat
3481 ctgataaaag ctgtggatca tctcctagga aaatagaaca aaacatacat attcacatta
3541 cacagttcca gagtatgtgg accccccaaa gtccagagat tgccctaggg gatctttaga
3601 ttcttgttta gaactgttga ttttgaacac aacatacact gtcaaacttt acatcaggga
3661 tccaacataa ctcagacata gcccaggtag cctgtttcta acacaactgt cataatcctg
3721 aaatccaaaa ttgcactgtg tttgacatga gatagtttaa gttccacaaa atccaaattt
3781 accatattat tgtttttaaa aaagcagttt agagcaaact gtcactaaac ttggataaat
3841 gggtcagaaa gtacagattt aataaagtcg tacctctaat gttcaaaaaa aaaaaaagaa
3901 aaaaaaaaaa aaa
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