LOCUS BC036080 2760 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens GA binding protein transcription factor, beta subunit
1, mRNA (cDNA clone MGC:33732 IMAGE:5295830), complete cds.
ACCESSION BC036080
VERSION BC036080.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2760)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2760)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: k Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 68215703.
FEATURES Location/Qualifiers
source 1..2760
/db_xref="H-InvDB:HIT000051615"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33732 IMAGE:5295830"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2760
/gene="GABPB1"
/gene_synonym="BABPB2"
/gene_synonym="E4TF1"
/gene_synonym="E4TF1-47"
/gene_synonym="E4TF1-53"
/gene_synonym="E4TF1B"
/gene_synonym="GABPB"
/gene_synonym="NRF2B1"
/gene_synonym="NRF2B2"
/db_xref="GeneID:2553"
/db_xref="HGNC:HGNC:4074"
/db_xref="MIM:600610"
CDS 219..1370
/gene="GABPB1"
/gene_synonym="BABPB2"
/gene_synonym="E4TF1"
/gene_synonym="E4TF1-47"
/gene_synonym="E4TF1-53"
/gene_synonym="E4TF1B"
/gene_synonym="GABPB"
/gene_synonym="NRF2B1"
/gene_synonym="NRF2B2"
/codon_start=1
/product="GA binding protein transcription factor, beta
subunit 1"
/protein_id="AAH36080.1"
/db_xref="GeneID:2553"
/db_xref="HGNC:HGNC:4074"
/db_xref="MIM:600610"
/translation="MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHL
AAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDM
LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAM
QNQINTNPESPDTVTIHAATPQFIIGPGGVVNLTDETGVSAVQFGNSSTSVLATLAAL
AEASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVIAIVTDGIQLGNLHSI
PTSGIGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEE
REALQKQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV"
BASE COUNT 859 a 519 c 569 g 813 t
ORIGIN
1 actcgcacac catgtgtccc tccgcgcgca gcacggggga cttttcggtg gggattttgg
61 gcgccgacca gacgcggcat tttcggaaaa tagcgccctg tgcagctgaa gcgctttgtg
121 tgtagcgggg ccgcgtcagc ccggccgggt acgaggcgcc tcgggtcccc gcaccacctc
181 ctgctgcctt cccgtcgccg ctcccgaagc ttttccagat gtccctggta gatttgggaa
241 agaagctttt agaagcggca cgagcaggtc aagatgatga agttcgtatt ttgatggcaa
301 atggagctcc ctttactaca gactggctgg gaacttctcc acttcatcta gcagcacagt
361 atggtcatta ttccaccaca gaggtactgc tgcgagctgg tgtgagcaga gatgccagaa
421 ccaaagtgga ccgaacacca ttacatatgg cagcttctga gggccatgcc agcatagtag
481 aggttttact taagcatggt gctgatgtca atgcaaagga catgttaaag atgacagctc
541 tccattgggc cacagaacac aatcatcaag aggtggtgga acttttaatc aaatatggtg
601 ctgatgtaca cacgcaaagt aaattttgta aaactgcatt tgatatttca atagacaatg
661 gaaatgaaga tttagcagag atattacaga ttgctatgca gaaccaaatc aacacaaacc
721 cagagagtcc tgacactgtg acaatacatg ctgcaacacc acagtttatc attggacctg
781 gaggggtggt gaacctaaca gatgaaacgg gtgtatctgc tgttcagttt ggaaactctt
841 ctacatcagt attagctaca ttagctgcct tagctgaagc atctgctcca ttgtccaatt
901 cttcagaaac tccagtagtg gccacagaag aagtagttac tgcagaatct gtggatggtg
961 ccattcagca agtagttagt tcagggggtc agcaagtcat cgcaatagtt acagatggaa
1021 ttcagcttgg aaatttgcac tctattccaa ccagtggaat tggtcagccc atcattgtga
1081 ccatgccaga tggacaacaa gtattaacag taccagcaac agacattgct gaagaaactg
1141 ttataagtga agaaccacca gctaagagac aatgtatcga aataattgaa aaccgggtgg
1201 aatctgcaga aatagaagag agagaagctc ttcagaaaca gctggatgaa gcaaatcgag
1261 aagcacaaaa atatcgacag cagctcctaa agaaagaaca ggaagcagag gcctacagac
1321 agaagttgga agctatgact cgtcttcaga ctaataaaga agctgtttaa ttgaaatgaa
1381 catgtagttt gattttactt ttggtcaaga aagaatacaa tcttgaactg tacacaacaa
1441 aggtacagcc atgggaatac agaatgatag aagagactac agatggataa ttggacttaa
1501 gccatgagct ctgagttctt gtaacataaa actttacttt agaagttgtg aaatgtattt
1561 aaaactgaat tctgtaaata gttttttttt ttttacagtt ccaaatgagt tgataaagat
1621 tgttgaagag atccaaaacc agaataagcc actgtttttg tgaattcttt ttgattttag
1681 tacaaacctt aatttctcag aaacggaaca gttttaaggg tgatcgttgt tggttaggcc
1741 aaatgttgtg taataattat ggtggactga tgctggaatt actcctgtag gtataaacct
1801 ctgtatgaag agaagatttc tcccaggaaa tctttgtaca gctttaagtt gtgtcagatt
1861 ctctgaaaac attttttaga aagcaaaatt tttatatttg ttcaatttca gctataccca
1921 agtagattta catgtatatg aagcaaatat ttttaaaaat ttctgtttgt acatattctg
1981 catgttttat aatttcaaaa tgcatcactt acataggtat ttctcccaca gaaatgatga
2041 aagtgaccag aaaaaaacaa aaacaaaacc cctttactct gtaggtcatt gaaacgaagt
2101 aagctggcag ctggttttat tggaatgaca gtgttctcgg aaggagcagc ctacaagata
2161 acttgaattt gccaattctg caaaatctgt gcttttttga aaatttaaga gtggggacgt
2221 gaaactgtat tctgtgcctt ccatcatgat ttccacatga aagcacttta aggcactgat
2281 tttaagataa tgtttttgga aaacccaatg catatgggtt tctgaaatat tttatggact
2341 tatttctccc caggaaatga ttcttacgga aaaaaattgc ttttgtatgt agaacaggaa
2401 ctttttgtat tacagtgatg caatagacat gtctaatgta acttctactt ttccttttga
2461 aagctcagtg tctgtgctat gacttgctct catcacaata ttgttgaatt ccacaatgta
2521 tggacattaa acactggcag actgttcact ttttcttttt tttttttggt aaaatattac
2581 ttcaaacccc tttttcttgc tttatttttc agtgttttat tgctttatga actgtttaac
2641 cctgaaatcc ctctaggtta tctatactgt ataaaaaagc aattaccctt aaaactgtac
2701 tctggcctac ttttctattt tgcaattaaa tatctttttc acataaaaaa aaaaaaaaaa
//