LOCUS BC036068 2894 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens chloride channel 4, mRNA (cDNA clone MGC:33700
IMAGE:5311366), complete cds.
ACCESSION BC036068
VERSION BC036068.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2894)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2894)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: p Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11641404.
FEATURES Location/Qualifiers
source 1..2894
/db_xref="H-InvDB:HIT000094242"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33700 IMAGE:5311366"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2894
/gene="CLCN4"
/gene_synonym="ClC-4"
/gene_synonym="ClC-4A"
/gene_synonym="CLC4"
/db_xref="GeneID:1183"
/db_xref="HGNC:HGNC:2022"
/db_xref="MIM:302910"
CDS 51..2333
/gene="CLCN4"
/gene_synonym="ClC-4"
/gene_synonym="ClC-4A"
/gene_synonym="CLC4"
/codon_start=1
/product="chloride channel 4"
/protein_id="AAH36068.1"
/db_xref="GeneID:1183"
/db_xref="HGNC:HGNC:2022"
/db_xref="MIM:302910"
/translation="MVNAGAMSGSGNLMDFLDEPFPDVGTYEDFHTIDWLREKSRDTD
RHRKITSKSKESIWEFIKSLLDAWSGWVVMLLIGLLAGTLAGVIDLAVDWMTDLKEGV
CLSAFWYSHEQCCWTSNETTFEDRDKCPLWQKWSELLVNQSEGASAYILNYLMYILWA
LLFAFLAVSLVRVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLLIKTVTLVLVVSYG
LSLGKEGPLVHVACCCGNFFSSLFSKYSKNEGKRREVLSAAAAAGVSVAFGAPIGGVL
FSLEEVSYYFPLKTLWRSFFAALVAAFTLRSINPFGNSRLVLFYVEYHTPWYMAELFP
FILLGVFGGLWGTLFIRCNIAWCRRRKTTRLGKYPVLEVIVVTAITAIIAYPNPYTRQ
STSELISELFNDCGALESSQLCDYINDPNMTRPVDDIPDRPAGVGVYTAMWQLALALI
FKIVVTIFTFGMKIPSGLFIPSMAVGAIAGRMVGIGVEQLAYHHHDWIIFRNWCRPGA
DCVTPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAVTSKWVADAF
GKEGIYEAHIHLNGYPFLDVKDEFTHRTLATDVMRPRRGEPPLSVLTQDSMTVEDVET
LIKETDYNGFPVVVSRDSERLIGFAQRRELILAIKNARQRQEGIVSNSIMYFTEEPPE
LPANSPHPLKLRRILNLSPFTVTDHTPMETVVDIFRKLGLRQCLVTRSGRLLGIITKK
DVLRHMAQMANQDPESIMFN"
BASE COUNT 686 a 693 c 821 g 694 t
ORIGIN
1 gttcaggtgg gcggccgcgg gcgcgatgcg gcactgcagg tgtaattagc atggtcaatg
61 cgggagcgat gagtggctct ggaaacctga tggatttcct cgatgagccg ttccctgatg
121 tggggacgta tgaggacttc cacaccatcg actggctaag ggaaaagtca cgggacaccg
181 acagacacag gaagatcacc agcaagagca aggagtccat atgggagttc atcaagagcc
241 tgctggatgc ctggtcggga tgggtggtga tgctgctcat cggcctgctg gcgggcacct
301 tggctggggt catcgatctc gccgtggact ggatgacgga cctgaaggag ggggtctgcc
361 tgtctgcctt ctggtatagc catgagcagt gttgctggac ttctaacgag accacttttg
421 aggacagaga caagtgtccc ctgtggcaga aatggtcgga gctgctggtg aatcagtcag
481 agggtgccag tgcttacatt ctgaattact taatgtacat cctatgggcg ctgctgtttg
541 catttttggc tgtctccctg gtgcgtgtat ttgcaccata tgcctgtggc tctggcatac
601 cagagataaa gaccattttg agcggcttta tcatcagggg ctacttgggg aagtggaccc
661 tgctaatcaa gacagtcacg ctggtgctgg tagtgtccta cggtctgagc cttgggaagg
721 aagggccgct agtgcacgtg gcttgttgct gtggcaactt cttcagcagc cttttctcca
781 agtacagcaa gaatgagggc aagaggcggg aggtgctttc agctgcagcg gctgctggag
841 tctctgttgc ctttggtgca ccaattggag gcgtgctttt cagtctagaa gaggtcagtt
901 actactttcc cctgaagacc ttgtggaggt catttttcgc agccctggtg gcggccttta
961 cgctgagatc catcaatccc tttgggaata gccgtctcgt tctcttttat gtggaatacc
1021 acacgccctg gtacatggct gaactcttcc ccttcatcct gcttggggtc ttcgggggct
1081 tgtggggaac cctcttcatc cgctgcaaca tcgcctggtg caggaggcgc aagaccacca
1141 ggctggggaa gtacccggtg ctggaggtca ttgtggtgac tgccatcact gccatcattg
1201 cctaccccaa tccctacaca cgccagagca ccagcgagct catttctgag ctgttcaatg
1261 actgtggagc ccttgagtct tcccagctct gtgactacat caatgacccc aacatgactc
1321 ggcctgtgga tgacattcca gaccggccgg ctggtgtcgg tgtttacacg gccatgtggc
1381 agctggccct ggcactgatc ttcaaaatcg tcgttaccat atttaccttt ggcatgaaga
1441 tcccgtcggg cctcttcatc cccagcatgg ctgtgggcgc gatagcgggc aggatggtgg
1501 gaattggcgt ggagcagctg gcctaccatc accatgactg gatcatcttc aggaactggt
1561 gcagacccgg tgcagactgt gtcacgccag ggctgtacgc aatggtggga gctgcggcct
1621 gcctcggtgg agttaccagg atgacggtgt cattggtggt catcatgttt gaattaaccg
1681 ggggtctgga gtacatcgtg cccctgatgg cggcggctgt gaccagcaag tgggtagctg
1741 atgcatttgg gaaagaaggc atctacgagg cccacatcca cttaaatggg taccctttcc
1801 ttgacgtgaa ggacgagttt actcaccgca cactggccac cgacgtcatg cggccccggc
1861 ggggagagcc gccactgtcg gtgctcaccc aggacagcat gactgtcgag gacgtggaga
1921 cgctcatcaa ggagaccgac tacaacggct tccccgtggt ggtctccaga gactccgagc
1981 gcctcattgg atttgcccag aggagggaac tgattctcgc aataaagaac gccagacaga
2041 ggcaggaggg cattgtgagc aattccatca tgtacttcac ggaggaaccc cccgagctgc
2101 cggccaacag cccacatccc ctgaagctgc ggcgcatcct gaacctcagc ccgtttacag
2161 tgacagacca cactccgatg gaaacggtgg tggatatctt ccggaaactg gggcttcggc
2221 agtgcctggt gacgcggagc gggagacttc ttggcatcat cacaaaaaag gatgttctga
2281 gacatatggc ccagatggca aaccaggacc ccgaatccat catgtttaat tagcaacaag
2341 gtggcaatta ttttcagaaa aacactgact gtgtcattta aaaagaaata aatgatatgt
2401 tattatccca atgaaagatc atgcattggg gacagcagaa acaaaagctt ttttggaaag
2461 gcggggaaga aggatgaaac ctttaaaaac aaaaacaaaa acatcaatga gtaggcattt
2521 tatagcttta accccgtatg agtttcaagc tgtgtttcct aatgagtttg ctactgctgt
2581 gggggcatgt gggtgggtaa atgatgtaaa tgatgtgatc tgtacaagta tgtggagcat
2641 gaatgctgac tcaagaaact tttactcctt ctgctcaagg ctgatgtttg taacttatga
2701 acacacgtga agtgttgagt ccaaaagaca aaggggcatc ggcatgtcag cgtccttatt
2761 tattggttct tgaagttttg ctgctatgtt actgaatcat actaaagaca tttgcgctta
2821 ctttgttgaa aaagaaaaag aaattaaatt tgaacacagt gaaagctgca agtatgccaa
2881 aaaaaaaaaa aaaa
//