LOCUS BC035303 3771 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase 7 (GalNAc-T7), mRNA (cDNA clone
IMAGE:2900412), partial cds.
ACCESSION BC035303
VERSION BC035303.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3771)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3771)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: o Column: 9.
FEATURES Location/Qualifiers
source 1..3771
/db_xref="H-InvDB:HIT000093818"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2900412"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3771
/gene="GALNT7"
/gene_synonym="GALNAC-T7"
/gene_synonym="GalNAcT7"
/db_xref="GeneID:51809"
/db_xref="MIM:605005"
CDS <1..1488
/gene="GALNT7"
/gene_synonym="GALNAC-T7"
/gene_synonym="GalNAcT7"
/codon_start=1
/product="GALNT7 protein"
/protein_id="AAH35303.1"
/db_xref="GeneID:51809"
/db_xref="MIM:605005"
/translation="KQAIQASIKEFGFNMVASDMISLDRSVNDLRQEECKYWHYDENL
LTSSVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLDEYIKL
WNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDR
TICTVPLIDVINGNTYEIIPQGGGDEDGYARGAWDWSMLWKRVPLTPQEKRLRKTKTE
PYRSPAMAGGLFAIEREFFFELGLYDPGLQIWGGENFEISYKIWQCGGKLLFVPCSRV
GHIYRLEGWQGNPPPIYVGSSPTLKNYVRVVEVWWDEYKDYFYASRPESQALPYGDIS
ELKKFREDHNCKSFKWFMEEIAYDITSHYPLPPKNVDWGEIRGFETAYCIDSMGKTNG
GFVELGPCHRMGGNQLFRINEANQLMQYDQCLTKGADGSKVMITHCNLNEFKEWQYFK
NLHRFTHIPSGKCLDRSEVLHQVFISNCDSSKTTQKWEMNNIHSV"
BASE COUNT 1227 a 629 c 724 g 1191 t
ORIGIN
1 aaacaagcaa ttcaagccag cattaaagag tttggattta acatggtggc aagtgacatg
61 atctcactgg accgcagcgt caatgactta cgccaagaag aatgcaagta ttggcattat
121 gatgaaaact tgctcacttc gagcgttgtc attgtcttcc ataatgaagg atggtcaacc
181 ctcatgagaa cagtccacag tgtaattaaa aggactccaa ggaaatattt agcagaaatt
241 gtgttaattg acgatttcag taataaagaa cacttaaaag aaaaactgga tgaatatatt
301 aagctgtgga atggcctagt gaaggtattt cgaaatgaaa gaagggaagg tttaattcaa
361 gcacgaagta ttggtgctca gaaggctaaa cttggacagg ttttgatata ccttgatgcc
421 cactgtgagg tggcagttaa ctggtatgca ccacttgtag ctcccatatc taaggacaga
481 accatttgca ctgtgccgct tatagatgtc ataaatggca acacatatga aattataccc
541 caagggggtg gtgatgaaga tgggtatgcc cgaggagcat gggattggag tatgctctgg
601 aaacgggtgc ctctgacccc tcaagagaag agactgagaa agacaaaaac tgaaccgtat
661 cggtccccag ccatggctgg gggattattt gccattgaac gagagttctt ctttgaattg
721 ggtctctatg atccaggtct ccagatttgg ggtggtgaaa actttgagat ctcatacaag
781 atatggcagt gtggtggcaa attattattt gttccttgtt ctcgtgttgg acatatctac
841 cgtcttgagg gctggcaagg aaatcctccg cccatttatg ttgggtcttc tccaactctg
901 aagaattatg ttagagttgt ggaggtttgg tgggatgaat ataaagacta cttctatgct
961 agtcgtcctg aatcgcaggc attaccatat ggggatatat cggagctgaa aaaatttcga
1021 gaagatcaca actgcaaaag ttttaagtgg ttcatggaag aaatagctta tgatatcacc
1081 tcacactacc ctttgccacc caaaaatgtt gactggggag aaatcagagg cttcgaaact
1141 gcttactgca ttgatagcat gggaaaaaca aatggaggct ttgttgaact aggaccctgc
1201 cacaggatgg gagggaatca gcttttcaga atcaatgaag caaatcaact catgcagtat
1261 gaccagtgtt tgacaaaggg agctgatgga tcaaaagtta tgattacaca ctgtaatcta
1321 aatgaattta aggaatggca gtacttcaag aacctgcaca gatttactca tattccttca
1381 ggaaagtgtt tagatcgctc agaggtcctg catcaagtat tcatctccaa ttgtgactcc
1441 agtaaaacga ctcaaaaatg ggaaatgaat aacatccata gtgtttagag agaaaaaaat
1501 aaaccaataa cctacctact gacaagtaaa tttatacagg actgaaaacc gcctgaaacc
1561 tgctgcaact attgttatta actctgtata gctccaaacc tggaacctcc tgatcagttt
1621 gaaggacatt gataaactgt gattttacaa taacattatc atctgcagtt actgtttaca
1681 agactgcttt taccttaaac tttgtagatg tttacatctt tttgttgtgt tttaagatga
1741 tgttggtaat ttgtgccttt agctctgttt tattagacag agttaaagca tgttgtcttc
1801 tttgggatta cactcagggg tctgaaaggc agtttgattt ttatttttaa cacacttgaa
1861 aaaaggttgg agtagccaga ctttcatata taacttggtg attatcaacc tgttgtgtct
1921 ttatttaatt ttacatcttt ttgaagcact gccacaggtt attagccaag gtggccttcc
1981 ttcacagtca tgctgctttt ttgaaaggtg aatttcaaca catttagtgc ctctttcatt
2041 tctcagtata tatttcaaga gcttgtgatg aaatctatag gatggtaatg atggacttgt
2101 cacctgtatg gggaatactt ttactactca gaaatgaatt tatgtgctgc catttgctat
2161 aaagttgaac tttgtatggc ttgaaaaaga aatgacaata tggaacatcc caaggctgtc
2221 ccatagggtt ggaagttgtg tagcattcac tcccttacct actggcattc ccagtgccct
2281 ctgtccatac ctacttctag gattgcaaag gagtcttcca actagagaaa aattgtccac
2341 tgacatttgg gatttacttt tctccaatac ctgccaatac agaaaactat tatcagttgt
2401 tattgttatc ccttgaaagc gagggtgaca aaaacaacaa aacaccgtta taaacacatc
2461 aaaggttcat tctgactgag gtaagacttt ccaagccctt gttagattag gccttataaa
2521 acttgtgtgc attataacct aagctgtgca acctgtgaag ccaagagtga actgatgttt
2581 catttatatt ttcatccaaa tgacattatc tgcacgtttt taaaatttaa aaacaaagga
2641 ctatttaaaa atacagttta ttaacaaacg tgaactactt tctgttacat taggtgttcc
2701 ctagtgtttc ttaatttctt tttagaaagt gtatttttat tagtattttt ccggtgaaca
2761 gaagatttgt ttggatttaa acatttacta agacagtacc tattaggaaa accaaatatt
2821 gcaaatggtc aattcgattt taatttctca aaagatactc tgttatccag aagattaaaa
2881 tgcctacatt gagtgcttaa aaaaaaaaaa aacaactgtg atgatgtgag cagaatggca
2941 agtaagttaa gcatttttga tcctgtaatc atggtatcat tacaatgaaa ggaattcaca
3001 aactactgcc agaggaagtt tgttttttaa tttaagaggg aaatataacc tataaatttg
3061 tttcttccaa gcttagctct taaatttgga gactcaaagt taaacatcct caacagagtt
3121 ttatttataa ttttgaattg tcaatttgta ttttgctact gatctgtgat caaccatttt
3181 aactttcatc tctagggatg tttaacattt ataattgcaa aataaaccaa ctataaaaaa
3241 agaaactaag agagaattgg tactttaatt acttgtgtgt ttgcaaatag gctccatttt
3301 ccatgttgag tagattataa ccttattaac tatgcatagg cctaagaaag gtggcaatga
3361 actgtgcatg taaattttaa atgggtactt tgtgcaattc gttaaaagaa gatactctat
3421 gaatatgatt ctatatattg aaatcagaaa acctaccaaa caaaaacatc agaagctgct
3481 gccataatga ctattttcta ctgtaggctg ctttggaaat aattcccata tccttgcttt
3541 gtaagttggt aatatcacta tgcatttcta cacattttat aaatttgatt tatgcagatt
3601 ttgatacact gtatgtttct gtagaaattg tataaatatt caaaatttta ttaggataaa
3661 tttgagaaac ttacgtatat cttaattctg ggttgcttgt tttttaggtg acaaaaataa
3721 aatattgtat tttaattcaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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