LOCUS BC034983 3362 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens GTPase activating Rap/RanGAP domain-like 3, mRNA (cDNA
clone MGC:32930 IMAGE:4821143), complete cds.
ACCESSION BC034983
VERSION BC034983.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3362)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3362)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC034983.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: h Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222344.
FEATURES Location/Qualifiers
source 1..3362
/db_xref="H-InvDB:HIT000051281"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32930 IMAGE:4821143"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3362
/gene="GARNL3"
/gene_synonym="bA356B19.1"
/gene_synonym="DKFZp761J1523"
/gene_synonym="RP11-356B19.1"
/db_xref="GeneID:84253"
/db_xref="HGNC:HGNC:25425"
CDS 66..3053
/gene="GARNL3"
/gene_synonym="bA356B19.1"
/gene_synonym="DKFZp761J1523"
/gene_synonym="RP11-356B19.1"
/codon_start=1
/product="GTPase activating Rap/RanGAP domain-like 3"
/protein_id="AAH34983.1"
/db_xref="GeneID:84253"
/db_xref="HGNC:HGNC:25425"
/translation="MKHFCSSSVSEDLGCRRGDFSRKHYGSVELLISSDADGAIQRAG
RFRVENGSSDENATALPGTWRRTDVHLENPEYHTRWYFKYFLGQVRQNYIGNDAEKSP
FFLSVTLSDQNNQRVPQYRAILWRKTGTQKICLPYSPTKTLSVKSILSAMNLDKFEKG
PREIFHPEIQKDLLVLEEQEGSVNFKFGVLFAKDGQLTDDEMFSNEIGSEPFQKFLNL
LGDTITLKGWTGYRGGLDTKNDTTGIHSVYTVYQGHEIMFHVSTMLPYSKENKQQVER
KRHIGNDIVTIVFQEGEESSPAFKPSMIRSHFTHIFALVRYNQQNDNYRLKIFSEESV
PLFGPPLPTPPVFTDHQEFRDFLLVKLINGEKATLETPTFAQKRRRTLDMLIRSLHQD
LMPDLHKNMLNRRSFSDVLPESPKSARKKEEARQAEFVRIGQALKLKSIVRGDAPSSL
AASGICKKEPWEPQCFCSNFPHEAVCADPWGQALLVSTDAGVLLVDDDLPSVPVFDRT
LPVKQMHVLETLDLLVLRADKGKDARLFVFRLSALQKGLEGKQAGKSRSDCRENKLEK
TKGCHLYAINTHHSRELRIVVAIRNKLLLITRKHNKPSGVTSTSLLSPLSESPVEEFQ
YIREICLSDSPMVMTLVDGPAEESDNLICVAYRHQFDVVNESTGEAFRLHHVEANRVN
FVAAIDVYEDGEAGLLLCYNYSCIYKKVCPFNGGSFLVQPSASDFQFCWNQAPYAIVC
AFPYLLAFTTDSMEIRLVVNGNLVHTAVVPQLQLVASRSDIYFTATAAVNEVSSGGSS
KGASARNSPQTPPGRDTPVFPSSLGEGEIQSKNLYKIPLRNLVGRSIERPLKSPLVSK
VITPPTPISVGLAAIPVTHSLSLSRMEIKEIASRTRRELLGLSDEGGPKSEGAPKAKS
KPRKRLEESQGGPKPGAVRSSSSDRIPSGSLESASTSEANPEGHSASSDQDPVADREG
SPVSGSSPFQLTAFSDEDIIDLK"
BASE COUNT 911 a 795 c 796 g 860 t
ORIGIN
1 cctttttgca aatggtagtt gatttttgca gaaggtttgt ggccagatcg ctatgtataa
61 tactgatgaa gcatttttgt tccagctctg tctcggaaga cctaggctgt agacgtgggg
121 atttcagtag gaaacattat ggatctgtgg agctgcttat ttccagtgat gctgatggag
181 ccatccaaag ggctggaaga ttcagagtgg aaaatggctc ttcagatgag aatgcaactg
241 ccctgcctgg tacttggcga agaacagacg tgcacttaga gaacccagaa taccacacca
301 gatggtattt caaatatttt ttaggacaag tccgtcagaa ctacattgga aacgatgccg
361 agaagagccc tttcttcttg tccgtgaccc tttctgacca aaacaatcaa cgtgtccctc
421 aataccgtgc aattctttgg agaaaaacag gtacccagaa aatatgcctt ccctacagtc
481 ccacaaaaac tctttctgtg aagtccatct taagtgccat gaatctggac aaatttgaga
541 aaggccccag ggaaattttt catcctgaaa tacaaaagga cttgctggtt cttgaagaac
601 aagagggctc tgtgaatttc aagtttgggg ttctttttgc caaagatggg cagctcactg
661 atgatgagat gttcagcaat gaaattggaa gcgagccttt tcaaaaattt ttaaatcttc
721 tgggtgacac aatcactcta aagggctgga cgggctaccg tggcggtctg gataccaaaa
781 atgataccac agggatacat tcagtttata ctgtgtacca agggcatgag atcatgtttc
841 atgtttccac catgttgcca tattccaaag agaacaaaca gcaggtggaa aggaaacgcc
901 acattggaaa cgatatcgtc accattgtgt tccaagaagg agaggaatct tctcctgcct
961 ttaagccttc catgatccgc tcccacttta cacatatttt tgccttagtg agatacaatc
1021 aacaaaatga caattacagg ctgaaaatat tttcagaaga gagcgtacca ctctttggcc
1081 ctcccttgcc aactccacca gtgtttacag accaccagga attcagggac tttttgctag
1141 tgaaattaat taatggtgaa aaagccactt tggaaacccc aacatttgcc cagaaacgtc
1201 ggcgtaccct ggatatgttg attagatctt tacaccagga tttgatgcca gatttgcata
1261 agaacatgct taatagacga tcttttagtg atgtcttacc agagtcaccc aagtcagcgc
1321 ggaagaaaga ggaggcccgc caggcggagt ttgttagaat agggcaggca ctaaaactga
1381 aatccattgt gagaggggat gctccatcaa gcttggcagc ttcagggatc tgtaaaaaag
1441 agccgtggga gccccagtgt ttctgcagta atttccctca tgaagccgtg tgtgcagatc
1501 cctggggcca ggccttgctg gtttccactg atgctggcgt cttgctagtg gatgatgacc
1561 ttccatcagt gcccgtgttt gacagaactc tgccagtgaa gcaaatgcat gtgcttgaga
1621 ccctggacct tctggttctc agagcagaca aaggaaaaga tgctcgcctc tttgtcttca
1681 ggctaagtgc tctgcaaaag ggccttgagg ggaagcaggc tgggaagagc aggtctgact
1741 gcagagaaaa caagttggag aaaacaaaag gctgccacct gtatgctatt aacactcacc
1801 acagcagaga gctgaggatt gtggttgcaa ttcggaataa actgcttctg atcacaagaa
1861 aacacaacaa gccaagcggg gtcaccagca cctcattgtt atctcccctg tctgagtcac
1921 ctgttgaaga attccagtac atcagggaga tctgtctgtc tgactctccc atggtgatga
1981 ccttagtgga tgggccagct gaagagagtg acaatctcat ctgtgtggct tatcgacacc
2041 aatttgatgt ggtgaatgag agcacaggag aagccttcag gctgcaccac gtggaggcca
2101 acagggttaa ttttgttgca gctattgatg tgtacgaaga tggagaagct ggtttgctgt
2161 tgtgttacaa ctacagttgc atctataaaa aggtttgccc ctttaatggt ggctcttttt
2221 tggttcaacc ttctgcgtca gatttccagt tctgttggaa ccaggctccc tatgcaattg
2281 tctgtgcttt cccgtatctc ctggccttca ccaccgactc catggagatc cgcctggtgg
2341 tgaacgggaa cctggtccac actgcagtcg tgccgcagct gcagctggtg gcctccaggt
2401 cggatatata cttcacagca actgcagctg tgaatgaggt ctcatctgga ggcagctcca
2461 agggggccag tgcccgaaat tctcctcaga cacccccggg ccgagatact ccagtatttc
2521 cttcttccct gggggaaggt gaaattcaat caaaaaatct gtacaagatt ccacttagaa
2581 acctcgtggg cagaagcatc gaacgacctc tgaagtcacc cttagtctcc aaggtcatca
2641 ccccacccac tcccatcagt gtgggccttg ctgccattcc agtcacgcac tccttgtccc
2701 tgtctcgcat ggagatcaaa gaaatagcaa gcaggacccg cagggaacta ctgggcctct
2761 cggatgaagg tggacccaag tcagaaggag cgccaaaggc caaatcaaaa ccccggaagc
2821 ggttagaaga aagccaagga ggccccaagc caggggcagt gaggtcatct agcagtgaca
2881 ggatcccatc aggctccttg gaaagtgctt ctacttccga agccaaccct gaggggcact
2941 cagccagctc tgaccaggac cctgtggcag acagagaggg cagcccggtc tccggcagca
3001 gccccttcca gctcacggct ttctccgatg aagacattat agacttgaag taacagagtt
3061 gaatctcatt tgccatcttt agttttctta tggaggttta tactctttaa acagttctga
3121 tgtaatttct caacaaaatg tggcttttag cctgtcagtg atctattgga ccaaaccttc
3181 tgcacactcg gccagttccc tctccaatgt ccggtgccat ctttcctgac ctttgtttct
3241 ttctgttcag gaaccatcag tccccttgta ataaaggtgg tagatttcat tgaggtttta
3301 gattgaaact ttgaataaat caaaaatact cattcttatt tactgcaaaa aaaaaaaaaa
3361 aa
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