LOCUS BC034946 4866 bp mRNA linear HUM 19-OCT-2006
DEFINITION Homo sapiens SEC31 homolog B (S. cerevisiae), mRNA (cDNA clone
IMAGE:4826447), complete cds.
ACCESSION BC034946
VERSION BC034946.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4866)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4866)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: o Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38149909
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..4866
/db_xref="H-InvDB:HIT000093614"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4826447"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4866
/gene="SEC31B"
/gene_synonym="DKFZP434M183"
/gene_synonym="SEC31B-1"
/db_xref="GeneID:25956"
/db_xref="HGNC:HGNC:23197"
/db_xref="MIM:610258"
CDS 71..1117
/gene="SEC31B"
/gene_synonym="DKFZP434M183"
/gene_synonym="SEC31B-1"
/codon_start=1
/product="SEC31B protein"
/protein_id="AAH34946.1"
/db_xref="GeneID:25956"
/db_xref="HGNC:HGNC:23197"
/db_xref="MIM:610258"
/translation="MKLKELERPAVQAWSPASQYPLYLATGTSAQQLDSSFSTNGTLE
IFEVDFRDPSLDLKHRGVLSALSRFHKLVWGSFGSGLLESSGVIAGGGDNGMLILYNV
THILSSGKEPVIAQKQKHTGAVRALDFNPFQGNLLASGASDSEIFIWDLNNLNVPMTL
GSKSQPPEDIKALSWNRQAQHILSSAHPSGKAVVWDLRKNEPIIKVSDHSNRMHCSGL
AWHPDIATQLVLCSEDDRLPVIQLWDLRFASSPLKVLESHSRGILSVSWSQADAELLL
TSAKDSQILCRNLGSSEVVYKLPTQSSWCFDVQWCPRDPSVFSAASFNGWISLYAVMG
RSWEVQHMRQADKV"
BASE COUNT 1104 a 1289 c 1294 g 1179 t
ORIGIN
1 agcgggccag aggagcggct ccggccgccg cgcctgaccc ttgtccgggg tcttccgcac
61 aggatagacc atgaagctga aggaacttga gcggccagct gtccaggcat ggagcccagc
121 cagccaatac cctttgtatc tggccacagg aacatctgcc caacagctag attcctcctt
181 cagcacaaat ggcacattgg aaatatttga ggttgatttc agggaccctt ctctggactt
241 gaaacacaga ggagtccttt ctgccttgag caggtttcac aagctggtct gggggagctt
301 tggcagtggg cttctggaaa gctccggggt tattgctggc ggcggggaca atggcatgct
361 tattctatac aatgtgaccc acatcctgtc ttcggggaag gagcctgtga ttgctcagaa
421 acagaagcac acgggggctg tcagagccct cgactttaat cctttccagg gcaacctcct
481 ggcttcaggg gccagcgatt ctgaaatctt catttgggat ctgaataact tgaatgtgcc
541 aatgaccctg ggatccaagt cacagcctcc agaggacatc aaggcactgt cttggaaccg
601 gcaagcccaa cacattctgt cttctgctca ccccagtggc aaggcagttg tgtgggatct
661 caggaagaat gaacctatca tcaaagtcag tgatcacagc aacaggatgc actgctcagg
721 cctggcctgg catcctgaca tagccaccca gttagtgctg tgctcagagg atgatcgact
781 tcccgtgatt cagctgtggg acttgcgctt tgcctcctcg cccttgaagg tgctggagag
841 ccacagcagg gggatcttgt cagtgtcatg gagccaggct gatgctgagc tgctgctcac
901 tagtgctaag gacagccaga tcttgtgccg gaacctgggg agcagtgagg tggtatataa
961 gctaccaaca cagagcagct ggtgctttga tgtgcagtgg tgccctcggg acccttcagt
1021 gttctctgct gcctccttca acggctggat cagtttgtac gctgtgatgg gtaggagctg
1081 ggaagtccag cacatgagac aggctgacaa ggtttgaagg gcttggtaga gaatgctgga
1141 gggaaggggc tgtctctgtt tgtgggagag agacatatgg cttgagaagc ggagatattg
1201 gagattggga gaccagggcc cggggtttgg gagggctgca cctttgccct agtgcccatc
1261 ttcctgaaag gatgttagtt tctgccacaa tgtgaagaag gccttcacct tgactcttgt
1321 tattggatgg gccctgtagt atttcaggga ccgtgggacc cctttgctgg gacagttatt
1381 tcaagagtat gactcttatc tttctctctt ctatagatcc attttgtgcc acactccatt
1441 gtagactttg aatgtagtat ttccaagagc ctacttgcat gggagtccca ccctcgctac
1501 cactcacttc cccatcccct ggaatatggg agtctgacct ttctaggtca aattgggtgt
1561 ctcaaggatt cctcccaaaa tggagtttgt aggtggagtt cctgactaaa ctgccacttt
1621 aggatggcga tgcaggtgtc ttttcccccc agatctcctc ttccttcagc aaaggccagc
1681 ctctcccacc actgcaggtg ccagagcaag tggcacaagc atcactgata cctcccctga
1741 aaaaaccccc caaatggatt agaagaccaa caggtgtttc atttgctttt ggagggaagc
1801 tggttacttt tggcctcccc agcacccctg cccatctggt gccacagcct tgcccccgcc
1861 tagtcttcat cagtcaagtc accacagaat ctgaattcct gatgcgatca gctgagctgc
1921 aggaggcctt gggatcagga aatctactga attactgtca gaacaagagc cagcaagctt
1981 tactgcaaag tgaaaagatg ctgtggcagt tcctgaagcc cgccagagac agctcaggtg
2041 caaggagatg agactataca tcaggcaggt gaccttagag caagactcca gaatgaaatt
2101 cctaaagctt ttaggataca gtaaagatga gcttcagaag aaggtggcca catggttgaa
2161 gagtgacatg gggctaggtg agagtcctca gcccaaggga aatgacctca acagtgacag
2221 acaacaggcc ttctgcagcc aggcctccaa acacaccaca aaggaagcct ctgcttcctc
2281 agccttcttt gatgagctgg tccctcagaa catgactcct tgggagatcc ccatcacaaa
2341 agatattgat ggactcctaa gccaggctct cctgcttggg gaactgggtc cggccgtgga
2401 gctgtgtctg aaggaggagc gctttgctga tgccattatc ctggcccagg ctgggggtac
2461 agatctgctg aagcaaacac aggagcgcta cttggccaag aagaaaacca aaatctcctc
2521 gcttctagcc tgtgttgtgc aaaagaattg gaaggatgtg gtgtgtacct gtagcctgaa
2581 gaactggaga gaggcactgg ctttgctact gacatactca ggcacagaga aatttcccga
2641 gctctgtgac atgctgggaa ctcgcatgga acaggagggc agcagggcac taacctccga
2701 agccagactc tgttatgtgt gctcagggag tgtggagcgg ctggtggagt gctgggcaaa
2761 atgccaccag gctttgtccc ccatggctct gcaggacctg atggagaagg tgatggttct
2821 taacaggagc ttggagcaac tgcggggtcc tcatggggtg agcccaggcc ctgccacaac
2881 ctacagggtc actcagtatg ccaacctcct ggcagcccag ggcagcctgg ccactgccat
2941 gagctttcta cccagggact gtgctcagcc accagttcag cagctaagag atcggctttt
3001 tcatgctcaa ggttctgctg tcttgggcca acagtctccc cctttcccct tcccccggat
3061 tgttgtggga gctaccctcc actctaaaga gacatcatct tacagattgg gatcccagcc
3121 ttctcaccag gtcccaactc catctccaag gccaagggtt ttcacccctc agtcatcacc
3181 agcgatgccc ttggcacctt cccatcctag cccttatcag ggtcccagga cacagaatat
3241 aagtgactac agggcacctg ggcccccagg ccatccagcc tttgcctttg agccctgggg
3301 taaggcctgg acctcaagat tcctggaaag aagccccagc ccccagggga aacctccaga
3361 ggaacaagct gccagagaca tttatgcccc cagcaccaat tactgctcca gttatgagcc
3421 tcacccctga gctacaaggg attcttccct cacagccccc tgtctccagt gtgagtcatg
3481 ctcccccagg agttccagga gaactcagcc tgcagcttca gcacctgcca cctgagaaga
3541 tggaaaggaa ggagctgccc ccagagcatc agtccttgaa gagcagcttt gaggcgcttc
3601 tccaacgctg ctccctgtct gcaactgact taacaaaaag gaagctggaa gaggcagccc
3661 agcgtctgga gtatctatat gagaagctct gtgaggggac actctcacct catgtcgtgg
3721 ctgggctgca tgaggttgcc cgatgtgtgg atgcaggaag ctttgagcag ggccttgcag
3781 tgcatgccca ggtggcgggc tgtagcagct tcagcgaggt gtccagcttc atgcctatcc
3841 tgaagtctgt cctcatcatc gctcataagc tgctggtcta aaccaggcag cctctcttgc
3901 taggaggcca cttctgctgt tacataactc ctccctgcag aagaggggac ttctgcaaca
3961 gattctgttt ctttttcccg actcttttcc ttgctgccag gtatgtgatg ctgtaggctt
4021 ggctccaaac cggctgagtg cctgcttttt actcctttat gtctggcctt ctaggatctg
4081 tccaagacac tctcaggcct ggaggcaggg catagaatca gttcttcact ctccctaata
4141 ctacactctg taaggacctg gggcaggata tcttctcccc cagggatctt ctatttaagt
4201 ggcttctgag agggtgaaca ggattgttac ttttaagcct acctctgctg tgacccatca
4261 tgtgggtctt ttgtttctcc cttctgtggt ttatgagcct gcccttacct tttccctgcc
4321 tctgacttgg tatttccagg tccgtatttc tctgtagccc agggtctggg gtagagctga
4381 ctgctgttca ccctttgaac aactcatgga cgtgagggat gggtgctgag cagaaccaag
4441 agaggaaact ttggcgctgt taaaatggaa tttctcatct gccggcatta ttaagggtgg
4501 gctaggttgg atggaaggtg aaagggatga actgcctttt gctggaagct gtcttaggct
4561 gtgagacagg agcaggggaa ccacagccta tggggaactg cccttgactc cacctatgtt
4621 ggagccttag cccaaggcca ttccttctgt gatgataaag cccagttctg gaattggagc
4681 catattaagg aatgattctc ttccagcgct gctcctcaag ggttgggggt ccttctccct
4741 cgcagccacc acatgtctca gggctacctt ctccgattgg atttgcattt gtggcactgt
4801 ctttgatgca gtgatgtact taatggtgca ataaagctgc ttcgatttgg aaaaaaaaaa
4861 aaaaaa
//