LOCUS BC034740 2178 bp mRNA linear HUM 06-OCT-2003
DEFINITION Homo sapiens transient receptor potential cation channel, subfamily
V, member 5, mRNA (cDNA clone MGC:34269 IMAGE:5186668), complete
cds.
ACCESSION BC034740
VERSION BC034740.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2178)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2178)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: g Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361832.
FEATURES Location/Qualifiers
source 1..2178
/db_xref="H-InvDB:HIT000051222"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34269 IMAGE:5186668"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2178
/gene="TRPV5"
/gene_synonym="CAT2"
/gene_synonym="ECAC1"
/db_xref="GeneID:56302"
/db_xref="MIM:606679"
CDS 265..1410
/gene="TRPV5"
/gene_synonym="CAT2"
/gene_synonym="ECAC1"
/codon_start=1
/product="TRPV5 protein"
/protein_id="AAH34740.1"
/db_xref="GeneID:56302"
/db_xref="MIM:606679"
/translation="MGGFLPKAEGPGSQLQKLLPSFLVREQDWDQHLDKLHMLQQKRI
LESPLLRASKENDLSVLRQLLLDCTCDVRQRGALGETALHIAALYDNLEAALVLMEAA
PELVFEPTTCEAFAGQTALHIAVVNQNVNLVRALLTRRASVSARATGTAFRHSPRNLI
YFGEHPLSFAACVNSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNL
LLSYDGHGDHLQPLDLVPNHQGLTPFKLAGVEGNTVMFQHLMQKRRHIQWTYGPLTSI
LYDLTEIDSWGEELSFLELVVSSDKREARQILEQTPVKELVSFKWNKYGRPYFCILAA
LYLLYMICFTTCCVYRPLKFRGGNRTHSRDITILQQKLLQVILLRRG"
misc_feature 760..1050
/gene="TRPV5"
/gene_synonym="CAT2"
/gene_synonym="ECAC1"
/note="Arp; Region: FOG: Ankyrin repeat [General function
prediction only]"
/db_xref="CDD:COG0666"
BASE COUNT 586 a 566 c 524 g 502 t
ORIGIN
1 cacacacacc acctcacaac cacacactgc atgcacacac atacaccaca gccacacact
61 gtgcatacac gcacacccca caacccacat actgcatgca cacacacaca cctacaagct
121 gcatgctgca tacacaagtc atacaggaga taaactcaga gtcccagccc caaatagacc
181 ccatctcttg ctcagttgct gtcatcctag acctgtttct ttcgccacat ttctataatc
241 tgccagtgtc tgcaaggaga agacatgggg ggttttctac ctaaggcaga agggcccggg
301 agccaactcc agaaacttct gccctccttt ctggtcagag aacaagactg ggaccagcac
361 ctggacaagc ttcatatgct gcagcagaag aggattctag agtctccact gcttcgagca
421 tccaaggaaa atgacctgtc tgttcttagg caacttctac tggactgcac ctgtgacgtt
481 cgacaaagag gagccctggg ggagacggcg ctgcacatag cagccctcta tgacaacttg
541 gaggcggcct tggtgctgat ggaggctgcc ccagagctgg tctttgagcc caccacatgt
601 gaggcttttg caggtcagac tgcactgcac atcgctgttg tgaaccagaa tgtgaacctg
661 gtgcgtgccc tgctcacccg cagggccagt gtctctgcca gagccacagg cactgccttc
721 cgccatagtc cccgcaacct catctacttt ggggagcacc ctttgtcctt tgctgcctgt
781 gtgaacagcg aggagatcgt gcggctgctc attgagcatg gagctgacat cagggcccag
841 gactccctgg gaaacacagt attacacatc ctcatcctcc agcccaacaa aacctttgcc
901 tgccagatgt acaacctgct gctgtcctat gatggacatg gggaccacct gcagcccctg
961 gaccttgtgc ccaatcacca gggtctcacc cccttcaagc tggctggagt ggagggtaac
1021 actgtgatgt tccagcacct gatgcagaag cggaggcaca tccagtggac gtatggaccc
1081 ctgacctcca ttctctacga cctcacggag atcgactcct ggggagagga gctgtccttc
1141 ctggagcttg tggtctcctc tgataaacga gaggctcgcc aaattctgga acagacccca
1201 gtgaaggagc tggtgagctt caagtggaac aagtatggcc ggccgtactt ctgcatcctg
1261 gctgccttgt acctgctcta catgatctgc tttactacgt gctgcgtcta ccgccccctt
1321 aagtttcgtg gtggcaaccg cactcattct cgagacatca ccatcctcca gcaaaaacta
1381 ctacaggtga ttctcctcag aaggggatga gagagaattg catcaagggg tgatggtgct
1441 ggaaacgaag ccatgctact cagggacgat gccacgctct gggttccagc aggtgtaggc
1501 tcctaaacac ccaggtagaa attagacatg agaccaggag gccacagatg gggtttaatg
1561 agcacaagag catttgtcca gggagctgtg gattttctca cacaaacttt gaaagagtgc
1621 ttggcatgag taagcctgtg cttttgtgaa attttttggt aatttacaaa aagtatcagg
1681 gttttttagt gggatgttca aggtaaactc tattgctcaa aaggaggaaa attgtgctcc
1741 aagtccattt ctgagtccat ttttgttgta tttgggcaac acagacagcc ctgctggcct
1801 gcaccctctt ctgtgtgctg tctatatggg cccatgggaa taatgtgtca gctgtctgac
1861 tgcctgtcag acactctgca gaaggatgtc tggattgggt atcaggctga agtaaatact
1921 ctctgaggct ccatttagtg ttgtgggcct gccattctgt gttgtggtgg ccaagggaaa
1981 actagggtta ggaagaggac tgattcgagg tacacagtaa atatagaaat ctgctgttga
2041 agaaagtaaa cctccttttt gtgcaacaga aagggtagac tctaatgagc acttctgaat
2101 atatatattt aacaactgta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2161 aaaaaaaaaa aaaaaaaa
//