LOCUS BC034729 1304 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens lymphotoxin alpha (TNF superfamily, member 1), mRNA
(cDNA clone MGC:17018 IMAGE:4341621), complete cds.
ACCESSION BC034729
VERSION BC034729.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1304)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1304)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: j Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6806892.
FEATURES Location/Qualifiers
source 1..1304
/db_xref="H-InvDB:HIT000051218_04"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17018 IMAGE:4341621"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1304
/gene="LTA"
/gene_synonym="LT"
/gene_synonym="TNFSF1"
/db_xref="GeneID:4049"
/db_xref="HGNC:HGNC:6709"
/db_xref="MIM:153440"
CDS 7..624
/gene="LTA"
/gene_synonym="LT"
/gene_synonym="TNFSF1"
/codon_start=1
/product="lymphotoxin alpha (TNF superfamily, member 1)"
/protein_id="AAH34729.1"
/db_xref="GeneID:4049"
/db_xref="HGNC:HGNC:6709"
/db_xref="MIM:153440"
/translation="MTPPERLFLPRVRGTTLHLLLLGLLLVLLPGAQGLPGVGLTPSA
AQTARQHPKMHLAHSTLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVP
TSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQ
EPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPSTVFFGAFAL"
BASE COUNT 354 a 395 c 296 g 259 t
ORIGIN
1 ctccccatga caccacctga acgtctcttc ctcccaaggg tgcgtggcac caccctacac
61 ctcctccttc tggggctgct gctggttctg ctgcctgggg cccaggggct ccctggtgtt
121 ggcctcacac cttcagctgc ccagactgcc cgtcagcacc ccaagatgca tcttgcccac
181 agcaccctca aacctgctgc tcacctcatt ggagacccca gcaagcagaa ctcactgctc
241 tggagagcaa acacggaccg tgccttcctc caggatggtt tctccttgag caacaattct
301 ctcctggtcc ccaccagtgg catctacttc gtctactccc aggtggtctt ctctgggaaa
361 gcctactctc ccaaggccac ctcctcccca ctctacctgg cccatgaggt ccagctcttc
421 tcctcccagt accccttcca tgtgcctctc ctcagctccc agaagatggt gtatccaggg
481 ctgcaggaac cctggctgca ctcgatgtac cacggggctg cgttccagct cacccaggga
541 gaccagctat ccacccacac agatggcatc ccccacctag tcctcagccc tagtactgtc
601 ttctttggag ccttcgctct gtagaacttg gaaaaatcca gaaagaaaaa ataattgatt
661 tcaagacctt ctccccattc tgcctccatt ctgaccattt caggggtcgt caccacctct
721 cctttggcca ttccaacagc tcaagtcttc cctgatcaag tcaccggagc tttcaaagaa
781 ggaattctag gcatcccagg ggaccacacc tccctgaacc atccctgatg tctgtctggc
841 tgaggatttc aagcctgcct aggaattccc agcccaaagc tgttggtctg tcccaccagc
901 taggtggggc ctagatccac acacagagga agagcaggca catggaggag cttgggggat
961 gactagaggc agggagggga ctatttatga aggcaaaaaa attaaattat ttatttatgg
1021 aggatggaga gaggggaata atagaagaac atccaaggag aaacagagac aggcccaaga
1081 gatgaagagt gagagggcat gcgcacaagg ctgaccaaga gagaaagaag taggcatgag
1141 ggatcacagg gccccagaag gcagggaaag gctctgaaag ccagctgccg accagagccc
1201 cacacggagg catctgcacc ctcgatgaag cccaataaac ctcttttctc tgaaaaaaaa
1261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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