LOCUS BC034013 3180 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Rho guanine nucleotide exchange factor (GEF) 1, mRNA
(cDNA clone MGC:21456 IMAGE:3451036), complete cds.
ACCESSION BC034013
VERSION BC034013.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3180)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3180)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: a Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..3180
/db_xref="H-InvDB:HIT000042038"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21456 IMAGE:3451036"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3180
/gene="ARHGEF1"
/gene_synonym="GEF1"
/gene_synonym="LBCL2"
/gene_synonym="P115-RHOGEF"
/gene_synonym="SUB1.5"
/db_xref="GeneID:9138"
/db_xref="HGNC:HGNC:681"
/db_xref="MIM:601855"
CDS 21..2804
/gene="ARHGEF1"
/gene_synonym="GEF1"
/gene_synonym="LBCL2"
/gene_synonym="P115-RHOGEF"
/gene_synonym="SUB1.5"
/codon_start=1
/product="Rho guanine nucleotide exchange factor (GEF) 1"
/protein_id="AAH34013.2"
/db_xref="GeneID:9138"
/db_xref="HGNC:HGNC:681"
/db_xref="MIM:601855"
/translation="MASLSTWSSPAEPREMEDFARGAASPGPSRPGLVPVSIIGAEDE
DFENELETNSEEQNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLGSL
GPKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFELDRTRADLISEDVQRRFVQEVVQS
QQVAVGRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHVAERLLMHLEE
MQHTISTDEEKSAAVVNAIGLYMRHLGVRTKSGDKKSGRNFFRKKVMGNRRSDEPAKT
KKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGAPGQ
DTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEP
GDEGEPGRSGLELEPEEPPGWRELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRML
RVLHDLFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIG
DVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRR
LQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAVRDM
EDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVH
VLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAF
YVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVPAPASRPKPRPSPSSTREP
LLSSSENGNGGRETSPADARTERILSDLLPFCRPGPEGQLAATALRKVLSLKQLLFPA
EEDNGAGPPRDGDGVPGGGPLSPARTQEIQENLLSLEETMKQLEELEEEFCRLRPLLS
QLGGNSVPQPGCT"
BASE COUNT 648 a 990 c 1011 g 531 t
ORIGIN
1 cttcggttcc ggtggcggcg atggcttctc tttccacctg gagcagccct gcagagccca
61 gggagatgga agacttcgcc cgaggggcgg cctccccagg cccctcccgg cctggcctgg
121 ttcccgtcag catcatcggg gctgaggatg aggattttga gaacgagctg gagacaaact
181 cagaagagca aaacagccag ttccagagcc tggagcaggt gaagcggcgc ccagcccacc
241 tcatggccct cctgcagcac gtggccctgc agtttgagcc aggacccctg ctttgctgtc
301 tgcatgccga catgctgggc tcactgggcc ccaaggaggc caagaaggcc ttcctggact
361 tctaccacag cttcctggag aagacagcgg ttctccgggt gccggtccct cccaacgtcg
421 cctttgaact tgaccgcact agggctgacc tcatctccga ggatgtccag cggcggttcg
481 tgcaggaggt ggtgcaaagc cagcaggtag ccgtgggccg gcagctggag gacttccgtt
541 ccaagcggct catgggcatg acgccctggg agcaggagct ggcccagctg gaggcttggg
601 ttgggcggga ccgagccagc tacgaggccc gggagcggca cgtggcggag cggctgctca
661 tgcacctgga ggagatgcaa cataccatct ctaccgacga agaaaagagt gctgccgtgg
721 tcaacgccat tggcctgtac atgcgccacc ttggggtgcg gaccaagagt ggagacaaga
781 agtcggggag gaacttcttc cggaaaaagg tgatggggaa ccggcggtcg gacgagcctg
841 ccaagaccaa gaaggggctg agcagcatcc tggatgccgc ccgctggaac cggggagagc
901 cccaggttcc agattttcga cacctcaaag cagaggttga tgccgagaag ccaggtgcta
961 cagaccggaa gggaggcgtg gggatgccct ctcgggaccg gaatatcggg gctcctgggc
1021 aggacacccc tggagtctct ctgcaccctc tgtccctgga cagcccagac cgggaaccag
1081 gtgctgacgc ccccctggag ctgggggact catccccgca gggcccaatg agcctggagt
1141 ccttggcgcc cccagagagt accgacgagg gggccgaaac cgagagcccc gagcctggag
1201 atgaggggga gccggggcgg tcgggactgg agcttgaacc agaagagcct cccggctggc
1261 gggaactcgt ccccccagac accctgcaca gcctgcccaa gagccaggtg aagcggcagg
1321 aggtcatcag cgagctgctg gtgacagagg cggcccacgt gcgcatgctg cgggtgctgc
1381 acgacctctt cttccagccc atggcagaat gcctgttctt ccccttggag gagctgcaga
1441 acatcttccc cagcctggac gagctcatcg aggtgcattc cctgttcctc gatcgcctga
1501 tgaagcggag gcaggagagt ggctacctca tcgaggagat cggagacgtg ctgctggccc
1561 ggtttgatgg tgctgagggc tcctggttcc agaaaatctc ctcccgcttc tgcagccgcc
1621 agtcatttgc cttagagcag ctcaaagcca agcaacgcaa ggaccctcgg ttctgtgcct
1681 tcgtgcagga agctgagagc cgcccgcggt gccgccgcct gcagctgaag gacatgatcc
1741 ccacggagat gcagcggctg accaagtacc ccctgctcct gcagagcatc gggcagaaca
1801 cagaagagcc cacagaacgg gagaaagtgg agctggcagc cgagtgctgc cgggaaattc
1861 tacaccacgt caaccaagcc gtgcgtgaca tggaggacct gctgaggctc aaggactatc
1921 agcggcgcct ggacttgtcc caccttcggc agagcagcga ccctatgctg agcgagttca
1981 agaacctgga catcaccaag aagaaattgg tccacgaggg cccactgacg tggcgggtga
2041 ctaaggacaa ggcagtggag gtgcatgtgc tgctgctgga cgacctgctg ctgctgctcc
2101 agcgccagga cgagcggctg ctgctcaagt cccatagccg gacactgacg cccacgcccg
2161 atggcaagac catgctgcgg cccgtgctgc ggctcacctc cgccatgacc cgcgaggtgg
2221 ccaccgatca caaagccttc tacgtccttt ttacctggga ccaggaggcc cagatatacg
2281 agctggtggc acagactgtg tcggagcgga aaaactggtg tgctctcatc actgagactg
2341 ccggatccct gaaagtccct gcccctgcct ctcgccctaa gccccggccc agcccgagca
2401 gcacccgaga acccctcctc agcagctctg agaacggcaa tggtggccga gagacgtctc
2461 cagctgatgc ccggaccgag agaatcctca gtgacctcct gcccttctgc agaccaggcc
2521 ccgagggcca gctcgctgcc acggcccttc ggaaagtgct gtccctgaag cagcttctgt
2581 ttccggcgga ggaagacaat ggggcggggc ctcctcgaga tggggatggg gtcccagggg
2641 gcggccccct gagcccagca cggacccagg aaatccagga gaacctgctc agcttggagg
2701 agaccatgaa gcagctggag gagttggagg aggaattttg ccgcctgaga cccctcctgt
2761 ctcagcttgg ggggaactct gtcccccagc ctggctgcac ttgaggttcc cgcccaggaa
2821 ggccttttgc aagaaggaga ggaatggggg agaggacgtg agggaccacc cccacccaca
2881 cagctgccgc agcatctcac accccgaggg cctgaggaga gggagctgtg ggccacgcct
2941 gggaggggcc cagctggggt tactggcccc gcatgagcct cggccatctc tccctcctgc
3001 cctctgcttg ggggactcag ggctccattc tggagggcac cacggtgacc cgggccatct
3061 cagtattgcc tgtgggggcc acccctccac ccccaccccc aagtgccttc gctctgtttt
3121 tataccctga attggaggtt tattttttaa tatatattat ctaagaaaaa aaaaaaaaaa
//