LOCUS BC033905 3487 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens Rho guanine nucleotide exchange factor (GEF) 7, mRNA
(cDNA clone MGC:33815 IMAGE:5262912), complete cds.
ACCESSION BC033905
VERSION BC033905.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3487)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3487)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: g Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22027527.
FEATURES Location/Qualifiers
source 1..3487
/db_xref="H-InvDB:HIT000259069"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33815 IMAGE:5262912"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3487
/gene="ARHGEF7"
/gene_synonym="BETA-PIX"
/gene_synonym="COOL1"
/gene_synonym="DKFZp761K1021"
/gene_synonym="KIAA0142"
/gene_synonym="P50"
/gene_synonym="P50BP"
/gene_synonym="P85"
/gene_synonym="P85COOL1"
/gene_synonym="P85SPR"
/gene_synonym="PAK3"
/gene_synonym="PIXB"
/db_xref="GeneID:8874"
/db_xref="MIM:605477"
CDS 106..2367
/gene="ARHGEF7"
/gene_synonym="BETA-PIX"
/gene_synonym="COOL1"
/gene_synonym="DKFZp761K1021"
/gene_synonym="KIAA0142"
/gene_synonym="P50"
/gene_synonym="P50BP"
/gene_synonym="P85"
/gene_synonym="P85COOL1"
/gene_synonym="P85SPR"
/gene_synonym="PAK3"
/gene_synonym="PIXB"
/codon_start=1
/product="ARHGEF7 protein"
/protein_id="AAH33905.1"
/db_xref="GeneID:8874"
/db_xref="MIM:605477"
/translation="MNSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRL
LERLLPGTIEKTFDANDLYQGQNFNKVLSSLVTLNKVTADIGLGSDSVCARPSSHRIK
SFDSLGSQSLHTRTSKLFQGQYRSLDMTDNSNNQLVVRAKFNFQQTNEDELSFSKGDV
IHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKASEKPVSPKSGTLKSPPKGFDTTAIN
KSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANISYLMGNLEEICSFQ
QMLVQSLEECTKLPEAKQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLTEHSEELGE
FMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFK
NLSAQCQEVRKRKELELQILTEAIRNWEGDDIKTLGNVTYMSQVLIQCAGSEEKNERY
LLLFPNVLLMLSASPRMSGFIYQGKLPTTGMTITKLEDSENHRNAFEISGSVIERILV
SCNNQQDLQEWVEHLQKQTKVTSVGNPTIKPHSVPSHTLPSHPVTPSSKHADSKPAPL
TPAYHTLPHPSHHGTPHTTINWGPLEPPKTPKPWSLSCLRPAPPLRPSAALCYKEDLS
KSPKTMKKLLPKRKPERKPSDEEFASRKSTAALEEDAQILKVIEAYCTSAKTRQTLNS
TWQGTDLLHNHVLADDDQPSLDSLGRRSSLSRLEPSDLSEDSDYDSIWTAHSYRMGST
SRKSCCSYISHQN"
BASE COUNT 918 a 885 c 851 g 833 t
ORIGIN
1 agcgggtggg cgaggcggcg gcggcggcgg cgggggccgc gggccgggcc gcagctccga
61 ggtgaaggcg cgcgcccctc cccgcctgcc tcccgggccg cagcgatgaa ttccgccgag
121 caaaccgtta cgtggctcat cactctgggg gtgctggagt cgcccaaaaa aaccatctcg
181 gacccggagg gctttctgca ggcgtcgctg aaggatgggg tggtcctctg caggctgctg
241 gagcgcctgc tccccgggac catcgagaaa acgtttgatg caaatgattt gtatcagggg
301 cagaatttta acaaggtcct cagttcctta gtgactctaa ataaagtaac agcagacatc
361 gggctgggga gtgactccgt gtgtgcccgg ccctcgtctc accgcataaa gtcttttgac
421 tcccttggat cacagtcttt gcacactcgg acttcaaaac tgttccaggg ccagtatcgg
481 agtttggaca tgaccgataa tagcaacaat caactggtag taagagcaaa gtttaacttc
541 cagcagacca atgaggacga gctttccttc tcaaaaggag acgtcatcca tgtcacccgt
601 gtggaagagg gaggctggtg ggagggcaca ctcaacggcc ggaccggctg gttccccagc
661 aactacgtgc gcgaggtcaa ggccagcgag aagcctgtgt ctcccaaatc aggaacactg
721 aagagccctc ccaaaggatt tgatacgact gccataaaca aaagctatta caatgtggtg
781 ctacagaata ttttagaaac agaaaatgaa tattctaaag aacttcagac tgtgctttca
841 acgtacctac ggccattgca gaccagtgag aagttaagtt cagcaaacat ttcatattta
901 atgggaaatc tagaagaaat atgttctttc cagcaaatgc tcgtacagtc tttagaagaa
961 tgcaccaagt tgcccgaagc taagcagaga gtcggaggct gctttttaaa cctgatgcca
1021 cagatgaaaa ccctgtacct cacgtattgt gccaatcacc cttctgcagt gaatgtcctc
1081 acggaacaca gtgaggagtt gggggagttc atggagacca aaggtgccag cagccctggg
1141 attctcgtgc tgaccacggg cctgagcaaa cccttcatgc gcctggataa ataccctacg
1201 ctgctcaaag agctcgagag acacatggag gattatcata cagatagaca agatattcaa
1261 aaatccatgg ctgccttcaa aaacctttca gcccaatgtc aagaagtccg gaagaggaaa
1321 gagcttgagc tgcagatcct gacggaagcc atccggaact gggagggcga tgacattaaa
1381 actctgggca acgtcactta catgtcccag gtcctgattc agtgtgccgg aagtgaggaa
1441 aagaatgaaa gatatcttct actcttccca aatgttttgc taatgttgtc tgccagtcct
1501 aggatgagtg gctttatcta tcagggaaag cttccaacga caggaatgac aatcacaaag
1561 cttgaggaca gtgaaaatca tagaaatgca tttgaaatat cagggagcgt gattgagcgg
1621 atattagtgt cgtgcaacaa ccagcaggat ctgcaggaat gggtggagca cctacagaag
1681 caaacgaagg tcacgtctgt gggaaacccc accataaagc ctcattcagt gccatctcat
1741 accctcccct cccacccggt cactccgtcc agcaagcacg cagacagcaa gcccgcgccg
1801 ctgacgcccg cctaccacac gctgccccac ccctcccacc acggcacccc gcacaccacc
1861 atcaactggg gacccctgga gcctccgaaa acacccaagc cctggagcct gagctgcctg
1921 cggcccgcgc ctcccctccg gccctcagct gctctctgct acaaggagga tcttagtaag
1981 agccctaaga ccatgaaaaa gctgctgccc aagcgcaaac ctgaacggaa gccttcagat
2041 gaggagttcg cgtcccggaa aagcacagct gctttggaag aagatgctca gattctgaaa
2101 gtcattgaag cttactgcac cagcgccaaa acaaggcaaa cactcaattc aacatggcaa
2161 ggcactgacc tgttgcataa tcacgtcttg gctgatgatg accaaccaag cctagactcc
2221 ctggggcgtc gcagtagcct ttctcgtttg gagccttcag acctctcgga agactctgac
2281 tatgacagta tatggacagc ccatagttac agaatgggtt ctacatctcg taagagctgt
2341 tgctcatata tctctcacca gaactaatgc acttctgagc ttttcttaac aaatgcttgt
2401 tgtatcgcag cctgcttttc ttagatgttt tcttgctgtt ccttgtctct tttatgtgat
2461 attttaacaa cttttgagag tgttcctgat atttcccatt gtactttgtg taggcttaac
2521 tgccgatgcg agtatacatt cgaatgactg actattggag ggaggtggtg tgttcacgtg
2581 agcctacatc cgagggtgct cttcgtaagg ggtagttgtt gttttatagc tccaaatggt
2641 ttttttattc tcagtgtagc aactgtttga tttctttctg gatacagctg tatgaacact
2701 tttctatttt atactgaaat cacacaggtt tgtgatctaa gtgccagaac catggaggag
2761 actctggcct tatctgtagg gacctaaatt ttttaagtgc tatgaacact gatcaagtag
2821 ttgtggagag atgagaagaa tatatgcagc aaaggtgctg tgagcccagt tccaacggct
2881 gtgttctggt aatcgtgcag aacagcatgt gggctctggg ccttggcagg tgcacagacg
2941 ggcgggcgtc acgtgtgttc agagcttgtc tccacctcac ggctctgtgc tcttctgtgt
3001 gctgcgttgt ggccgtgaag tgggagctct cctttccaaa ggcagagctt actgtcatgg
3061 ctcagatgtt cactcgcatc ttcaccccaa acttccctga attgcagtga tttctgttat
3121 aaggcacata gcaagcctgt accactctac agtaaaatct ctaccctaac agtttaaagc
3181 ccgaaagctg aagcattcag cctctgcaag tgtagactac tggactgtag tagaggcatt
3241 tggaatactt acaaagtcaa gtgctgtggc ttcagttccc ccggctcccc acccctgaca
3301 tccatactta tgttgtctgg aagagccatg gacacatcat tattttcagc aaccagctgc
3361 agtgaaactc catttacagc aaccccatag tataaaacca caatgcctca ttgtaatggg
3421 atattgaagt tcattgaaga attactaggt tgccatgtgg ctcacttatt taaaaaaaaa
3481 aaaaaaa
//