LOCUS BC033887 3359 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens KRR1, small subunit (SSU) processome component,
homolog (yeast), mRNA (cDNA clone MGC:33073 IMAGE:5268517),
complete cds.
ACCESSION BC033887
VERSION BC033887.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3359)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3359)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC033887.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: n Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37059784.
FEATURES Location/Qualifiers
source 1..3359
/db_xref="H-InvDB:HIT000042016"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33073 IMAGE:5268517"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3359
/gene="KRR1"
/gene_synonym="RIP-1"
/db_xref="GeneID:11103"
/db_xref="HGNC:HGNC:5176"
CDS 16..1161
/gene="KRR1"
/gene_synonym="RIP-1"
/codon_start=1
/product="KRR1, small subunit (SSU) processome component,
homolog (yeast)"
/protein_id="AAH33887.1"
/db_xref="GeneID:11103"
/db_xref="HGNC:HGNC:5176"
/translation="MASPSLERPEKGAGKSEFRNQKPKPENQDESELLTVPDGWKEPA
FSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVC
TTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKR
RQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYN
IKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPGS
QIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKE
ASTEAKIDVASIKEKVKKAKNKKLGALTAEEIALKMEADEKKKKKKK"
BASE COUNT 1176 a 530 c 638 g 1015 t
ORIGIN
1 ggaagcagct tgcaaatggc gtctccctcg ctggagcggc cagaaaaagg cgctggaaaa
61 agtgaatttc gtaaccagaa gccgaagccg gagaaccaag atgaatcaga actccttacg
121 gttcctgatg gttggaagga accagctttt tccaaagagg acaatcccag aggacttttg
181 gaggagagca gtttcgcaac tttgttccca aaatacaggg aagcttactt gaaagagtgt
241 tggccattgg tgcagaaagc cttaaatgaa catcatgtta atgcaaccct ggacctgatc
301 gaaggcagca tgactgtttg tactacaaag aagacttttg atccatatat catcattagg
361 gccagagatc tgataaaact gttagcaagg agtgtttcat ttgaacaggc agtacgaatt
421 cttcaggatg atgttgcatg tgacatcatt aaaataggtt ctttagtaag gaataaagag
481 agatttgtaa aacgaagaca acggcttatt ggtcccaaag gatctacatt gaaggcattg
541 gaactcttaa ctaattgtta cattatggtt cagggaaaca cagtttcagc cattggacct
601 tttagtggct taaaagaggt tagaaaagta gtccttgata ctatgaagaa tattcatcca
661 atttataaca ttaaaagctt aatgattaag agagagttgg caaaagattc tgaattacga
721 tcacaaagtt gggagagatt tttgccacag ttcaagcaca aaaatgtgaa taaacgcaag
781 gaaccaaaga aaaaaactgt taagaaagaa tatacgccat tcccaccacc acaaccagga
841 agtcagatcg ataaagaatt ggctagtggt gaatactttt tgaaggcaaa tcagaagaag
901 cggcagaaaa tggaagcaat aaaggctaaa caagcagaag ccatcagtaa gagacaagag
961 gaaagaaaca aagcatttat tccacctaag gaaaaaccaa ttgtgaaacc taaggaagct
1021 tctactgaag ctaaaattga tgtggccagc atcaaggaaa aggttaagaa agcaaagaat
1081 aagaaactgg gagctcttac agctgaagaa attgcactta agatggaggc agatgaaaag
1141 aaaaagaaga aaaaaaagta acatacccaa aactccttga ctagaactat ctccttttgt
1201 aaaggatttt gagatatcag gcattagttg ccttatttgt gagaaatttt ctgagggctt
1261 tttttttttt tggtggtggt ggttgttcat agaagagtgt tctttataaa ttatattatt
1321 attgtatttt ttgaaaaatt tatactagaa agtggtatat atgtctttgt atacattacg
1381 accattgtga ttatccatta aatccagtgt ctgatgctat tggttagtaa tgatgtccca
1441 gcatttgatg ttccctctct aatgataaca agtaaatatt taggtttatc ccttttgaaa
1501 gtttggtttt acttttaaca gtccatgaac agaaaattaa ggcctctaaa atcagatccc
1561 ctagttactc ctctgttctg aatctgggga agtagtaaac caaaaagaca gggaaaacca
1621 gatatttaga gtcgaagcag catgcaaaaa ataataatgt ttttaactaa tgaaggctac
1681 tggagttact aagaatcacc taaaaatgtg ctactgtacc ttgctcattt tgcagattta
1741 gaagctgaaa catgggttag gttacttact aaaagtccac ctgtggcaac ctgcaaataa
1801 tgcttattta tactaaagat gagtttatct gatagagtta ggaaatttct tcttttgagt
1861 aagagtattg ctataacata tatttttttc tgaaatgttt taaaatagaa gtacacctaa
1921 ttgttattgg ttaaaaagaa agccatatgt gaatgaggtt ggtttttggg ttttttcttt
1981 cctgaattgt attagtccaa aagaactaaa ttagggtact tgtgctgtac caaaatggta
2041 attataacag acagtattag aattactgaa ttaacaatga gaaagagaga agtgtatctg
2101 ttacgtggat atatgggcca gcctggatat acaacagagt agtaacctgt gaaacaaaca
2161 tagaatatcc tcttagacat tgttcctcat aatgcactga cagaattcac atagctctta
2221 atgaaacaat ttaagattga tgtacgtacg tttgacttgg tctcgctgtc ggttaactgt
2281 aaagttaggg ggaagaaaga aaaaaaatta aaagggtaga cacagttgag agttttattt
2341 taaaaagcta agtcttataa ttatgaccat taacttgctt tggctttatt gcagtgactt
2401 tccaagttta attattcaaa actttttgaa ctgactgaat taacttggta tttttaagtt
2461 gactttttac ataaacttta taaacctttt ataaaaagga aactatacca ttactataaa
2521 tggaaaatca ttttacacat catacctagc aggtaataaa atttaaaaaa taaaaattaa
2581 atattagaat gtgagaaatt tattaaaata tagttctaaa aataagtttc ttcctgagaa
2641 gaatgatact gtttatgatg aatccatagt gaaaagacag tgacctctct ttcatccagt
2701 ctagtatatc actaaatcat cattacgatg tttggctatc aagtcattaa ttactgtcct
2761 cctttcactg agctttattc aaattttgac aatcagagca ctgggaagaa ataaattcca
2821 caactgcctt tagccttctg gatactttct tttataaaat agaaaccttt tccacaccag
2881 ttctgcagca gtcgctatta gatgctcgtg gtagaaccca tcaatcatct ggtcctctgg
2941 gtactggtga gcatccctgg tcttcatacc tgtgagtggg ctttgtggtg aattactgta
3001 aatatgctac cctcactttt cttggcagtt atgtccatga aatcaagagt gtgatgttct
3061 agttattttt ttttatatat atttttaaat gttcaatatt caactattga aacaaatgta
3121 catctgtgaa ctagctaaaa tcatcttatg taccactaat atgcccagca cattttgtaa
3181 aacagtcctg atttggcctc caagggtatt tattgaacta ccagcagtat ctaggagacc
3241 acgaaggaat accacgaagg aatttatgct ccagtgcttg ccataatttg tctgagaagg
3301 aatctgttaa ataaaagctt ttatcctcta aaaaaaaaaa aagaaaaaaa aaaaaaaaa
//