LOCUS BC033777 2883 bp mRNA linear HUM 02-DEC-2006
DEFINITION Homo sapiens amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 8, mRNA (cDNA clone MGC:44837 IMAGE:4521845),
complete cds.
ACCESSION BC033777
VERSION BC033777.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2883)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2883)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC033777.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: f Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20806094.
FEATURES Location/Qualifiers
source 1..2883
/db_xref="H-InvDB:HIT000041948"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44837 IMAGE:4521845"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2883
/gene="ALS2CR8"
/gene_synonym="CARF"
/gene_synonym="FLJ21579"
/gene_synonym="NYD-SP24"
/db_xref="GeneID:79800"
/db_xref="HGNC:HGNC:14435"
/db_xref="MIM:607586"
CDS 331..2508
/gene="ALS2CR8"
/gene_synonym="CARF"
/gene_synonym="FLJ21579"
/gene_synonym="NYD-SP24"
/codon_start=1
/product="amyotrophic lateral sclerosis 2 (juvenile)
chromosome region, candidate 8"
/protein_id="AAH33777.1"
/db_xref="GeneID:79800"
/db_xref="HGNC:HGNC:14435"
/db_xref="MIM:607586"
/translation="MEQSNDSLRVNHNDGEESKTSAQVFEHLICMDSRDSSFGQNDSP
TVLPITTREANNSLISQNIPGPLTQTQTLSAEQFHLVDQNGQAIQYELQSLGESNAQM
MIVASPTENGQVLRVIPPTQTGMAQVIIPQGQLVDVNSPRDVPEEKPSNRNLPTVRVD
TLADNTSNYILHPQTSFPLPKKSVTGMLEEPLLGPLQPLSSNTPIWACRLRSCEKIGD
SYRGYCVSETELESVLTFHKQQTQSVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVN
AGSRAVVMECQYGPRRKGFQLKKVSEQESRSCQLYKATCPARIYIKKVQKFPEYRVPT
DPKIDKKIIRMEQEKAFNMLKKNLVDAGGVLRWYVQLPTQQAHQYHELETPCLTLSPS
PFPVSSLEEEETAVRDENCALPSRLHPQVAHKIQELVSQGIEQVYAVRKQLRKFVERE
LFKPDEVPERHNLSLFPTVNDIKNHIHEVQKSLRNGDTVYNSEIIPATLQWTTDSGNI
LKETMTVTFAEGNSPGESITTKVETNQTRGSLSPEPTHLLSSLSSFQPKIFTQLQGLQ
LQPRYTSPDESPAVVSVNNQPSSSPSGLLDTIGSAVMNNNSLLLGQSHSLQRDTCLTQ
NNSTASTMGNLPEPDQNLVAMDELVEVGDVEDTGNLEGTVHRILLGDVQTIPIQIIDN
HSALIEENPESTISVSQVKQEPKEPALSMEAKKTVDYKKLSAT"
BASE COUNT 952 a 573 c 576 g 782 t
ORIGIN
1 gagaaaatgc tgctgtgaag acccaattaa agctttcaca taaatgaagc tacagctatc
61 atgatttagt gcccccaaaa ggaagaactt cagtggacaa gaaaggacat ttctgggggt
121 agtagaatgc ttgaggcctg gaatttaaac ctgagccact atctgaaggt ttaatatatc
181 tttgccaagt ccaagggtac aaagattttc tcctgtgttt tcttctagaa gttttatcat
241 ttgatagtct gtgatccatt tcaagttgat ttgctatctg gtgtgagcta ttaaataata
301 gaagaaaatg gaattgaata tgatgtcagc atggaacaat ctaatgattc attaagagtc
361 aaccataatg acggtgaaga gtcaaaaacc agtgctcaag tatttgagca tctaatctgt
421 atggactcca gggattcttc ctttggacaa aatgattctc ctacagtttt gcccatcact
481 actcgtgaag caaataattc actcatatca cagaatatac cagggcccct gactcagaca
541 cagactcttt ctgcagagca attccatcta gtggaccaaa atgggcaggc tattcaatat
601 gaacttcagt cattggggga atccaatgca caaatgatga tcgttgccag cccaacagaa
661 aatggacagg tacttcgtgt aattccacct acccagacag gaatggcaca agtgattata
721 cctcaggggc aacttgtgga tgtgaatagt cctcgggatg tccctgaaga gaaacccagt
781 aacagaaact taccaactgt aagagtggat actctagcag acaataccag caattacatt
841 cttcatcctc aaacatcctt cccattgccc aaaaagtcag tgaccggaat gctggaagaa
901 ccccttctgg ggcctcttca gccactttct tctaatacac ctatatgggc ctgccgtctt
961 aggagctgtg agaaaattgg agattcatac cgtggctact gtgtaagtga gactgaatta
1021 gaaagtgtcc taacatttca caagcagcaa acacagagtg tttgggggac ccgtcagtct
1081 ccaagcccag ccaagcctgc tacacgcttg atgtggaaat cccagtatgt tccatatgat
1141 ggaatcccat ttgttaatgc agggagtaga gctgtggtaa tggagtgtca gtatgggcca
1201 agaagaaaag gtttccagtt aaaaaaagtc agtgagcagg aaagcaggtc ttgtcagctc
1261 tacaaagcca cttgtccagc tcggatttac attaaaaagg tacagaagtt tcctgaatat
1321 agagttccta cagaccccaa aattgacaag aaaattatca gaatggagca ggagaaagct
1381 tttaacatgc taaagaagaa cttggtagat gctggtggtg ttcttaggtg gtatgtacag
1441 ttacctacac agcaagctca tcagtatcat gaattagaga ctccctgcct cactttgtca
1501 ccttctcctt ttcctgtgtc ttctcttgaa gaagaggaaa ctgcagttag agatgagaat
1561 tgtgcattac cctcacgttt acatcctcaa gtagcacata agattcaaga attagtatca
1621 cagggaatag aacaagtgta tgcagtaagg aaacagctaa gaaaatttgt ggaaagggaa
1681 ctgttcaaac ccgatgaggt acctgaaaga cataatttat ctttgtttcc aactgtaaat
1741 gatataaaaa atcacatcca tgaggtacag aaatccttga gaaatggaga tacggtatat
1801 aactcagaga ttattccagc aacgcttcaa tggactacag acagtgggaa tattctcaaa
1861 gagaccatga cagttacatt tgcagaagga aattcaccag gagaatcaat taccaccaaa
1921 gtggaaacaa atcagaccag gggttctttg tctcctgagc caacccactt gctctcctca
1981 ctctcctcat ttcagcccaa aatatttaca caactacagg gtttgcagtt acaaccaagg
2041 tacacctctc ctgatgaatc accagctgtg gtatcagtaa ataaccagcc gtcctctagt
2101 ccttcaggac ttctggatac aataggaagt gctgtaatga ataataattc tctactgctt
2161 ggtcaaagtc atagccttca aagagataca tgcttaaccc aaaacaatag tactgcctcc
2221 accatgggta accttccaga accagatcaa aatctagttg caatggacga gctggtagaa
2281 gttggagatg ttgaggatac agggaatctg gaaggaactg ttcatcggat tctgttggga
2341 gatgtgcaga ctattccaat acagattata gacaaccact cagctcttat tgaagaaaat
2401 ccagaaagta ccatttctgt gagccaagtt aaacaagaac ccaaagaacc agcattgtct
2461 atggaagcaa aaaaaactgt ggactataag aaattatctg ctacataaat tattgaagct
2521 tttcagaatt tacaactctg gtgacttctg atgtcttaga aaggaaggtg aatatagtca
2581 aagcgtggca ttgagataat tggactgaag accagtttga tgagaagctt ttatttaaaa
2641 ctgatatatt tgttgccagt tccatatttt taccttcctt aagagatgtt ttactcttct
2701 tattttgtat aatttttatg ctctttgatt atctaataag gccagtattt caaaagctgt
2761 tctgaattta tccacagtaa tatagtctga acacaaatag tttacttaac ttatccttgg
2821 aaatattcaa ttttggttat tacaaaacag aaaagaacaa cagcaacaaa aaaaaaaaaa
2881 aaa
//