LOCUS BC033175 1099 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens RAB42, member RAS oncogene family, mRNA (cDNA clone
MGC:45806 IMAGE:4561064), complete cds.
ACCESSION BC033175
VERSION BC033175.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1099)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1099)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 43 Row: e Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22748674.
FEATURES Location/Qualifiers
source 1..1099
/db_xref="H-InvDB:HIT000041825"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45806 IMAGE:4561064"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1099
/gene="RAB42"
/gene_synonym="MGC45806"
/gene_synonym="RP4-669K10.6"
/db_xref="GeneID:115273"
/db_xref="HGNC:HGNC:28702"
CDS 307..624
/gene="RAB42"
/gene_synonym="MGC45806"
/gene_synonym="RP4-669K10.6"
/codon_start=1
/product="RAB42, member RAS oncogene family"
/protein_id="AAH33175.1"
/db_xref="GeneID:115273"
/db_xref="HGNC:HGNC:28702"
/translation="MATQGPDKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVE
TSVKNNCNVDLAFDTLADAIQQALQQGDIKLEEGWGGVRLIHKTQIPRSPSRKQHSGP
CQC"
BASE COUNT 275 a 284 c 306 g 234 t
ORIGIN
1 aagaaatgag tgaggtggat gcttcagcgc tgttagtctc ctccccatgc ccctcctcac
61 ttcatctagt ttagtccctt tatcctgtga agtaggggtc atcattagcc cccttttaca
121 gaggagagaa ttgaggcttc gagagagaga aacttggcca ggagtttcca ctcggtccga
181 cgccctcggt gccccgccgg gtgcatcacc aggtcctttt accggaatgt ggtgggtgtc
241 ctgctggtct ttgatgtgac aaacaggaag tcctttgaac acatccaaga ctggcaccag
301 gaggtcatgg ccactcaggg cccggacaag gtcatcttcc tgctggttgg ccacaagagt
361 gacctgcaga gcacccgctg tgtctcagcc caggaggccg aggagctagc tgcctccctg
421 ggcatggcct tcgtggagac ctcggttaaa aacaactgca atgtggacct ggcctttgac
481 accctcgctg atgctatcca gcaggccctg cagcaggggg acatcaagct agaagagggc
541 tgggggggtg tccggctcat ccacaagacc caaatcccca ggtcccccag caggaagcag
601 cactcaggcc catgccagtg ttgactctag gagagaaagg gttaaagcag tcccagcctt
661 agcccacctg gtgggatggg gagtgttaat atctctctgg aggacaaatg acagaagggt
721 tcatataaac agtatcctga cacagtcatg cttcctggat tttggagtcg aggctttcta
781 cagaaaagaa agttctgatg gccaggcatg gtggctcacg cctgtaatcc tagcattttt
841 ggaggccaag gacagtggat cacctgaggt caggggttcg agaccagcct ggccaacatg
901 gtgaaaccct gtctctacta aaaatacaaa aattagccag gcgtggtggt gcatgcctgt
961 aatcccagtt actccagagg ctaaggcagg agaattgctt gaacctggga ggcagagatt
1021 gcagtgagcc aagactgcgc cactgcactc cagcctgggc aacagagtga gactctgttt
1081 caaaaaaaaa aaaaaaaaa
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