LOCUS BC033106 1225 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens spermidine synthase, mRNA (cDNA clone MGC:45687
IMAGE:5420683), complete cds.
ACCESSION BC033106
VERSION BC033106.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1225)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1225)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 43 Row: k Column: 12.
FEATURES Location/Qualifiers
source 1..1225
/db_xref="H-InvDB:HIT000041805"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45687 IMAGE:5420683"
/tissue_type="Skin, melanoma, melanotic"
/clone_lib="NIH_MGC_112"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1225
/gene="SRM"
/gene_synonym="PAPT"
/gene_synonym="SPDSY"
/gene_synonym="SPS1"
/db_xref="GeneID:6723"
/db_xref="HGNC:HGNC:11296"
/db_xref="MIM:182891"
CDS 24..932
/gene="SRM"
/gene_synonym="PAPT"
/gene_synonym="SPDSY"
/gene_synonym="SPS1"
/codon_start=1
/product="spermidine synthase"
/protein_id="AAH33106.1"
/db_xref="GeneID:6723"
/db_xref="HGNC:HGNC:11296"
/db_xref="MIM:182891"
/translation="MEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHR
RSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGG
GDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFM
KQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIK
EMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQEPVQPLTQQQVAQMQL
KYYNSDVHRAAFVLPEFARKALNDVS"
BASE COUNT 238 a 421 c 339 g 227 t
ORIGIN
1 cccgcgccgc ccgcccgccc gccatggagc ccggccccga cggccccgcc gcctccggcc
61 ccgccgccat ccgcgagggc tggttccgcg agacctgcag cctgtggccc ggccaggccc
121 tgtcgctgca ggtggagcag ctgctccacc accggcgctc gcgctaccag gacatcctcg
181 tcttccgcag taagacctat ggcaacgtgc tggtgttgga cggtgtcatc cagtgcacgg
241 agagagacga gttctcctac caggagatga tcgccaacct gcctctctgc agccacccca
301 acccgcgaaa ggtgctgatc atcgggggcg gagatggagg tgtcctgcgg gaggtggtga
361 agcacccctc cgtggagtcc gtggtccagt gtgagatcga cgaggatgtc atccaagtct
421 ccaagaagtt cctgccaggc atggccattg gctactctag ctcgaagctg accctacatg
481 tgggtgacgg ttttgagttc atgaaacaga atcaggatgc cttcgacgtg atcatcactg
541 actcctcaga ccccatgggc cccgccgaaa gtctcttcaa ggagtcctat taccagctca
601 tgaagacagc cctcaaggaa gatggtgtcc tctgctgcca gggcgagtgc cagtggctgc
661 acctggacct catcaaggag atgcggcagt tctgccagtc cctgttcccc gtggtggcct
721 atgcctactg caccatcccc acctacccca gcggccagat cggcttcatg ctgtgcagca
781 agaacccgag cacgaacttc caggagccgg tgcagccgct gacacagcag caggtggcgc
841 agatgcagct gaagtactac aactccgacg tgcaccgcgc cgcctttgtg ctgcccgagt
901 ttgcccgcaa ggccctgaat gatgtgagct gagcccaggc gccaccactg atgccaccca
961 ggacctcgga ccttggagcc tgcggggtgc ctcggcccct ccagccccgg gccggacctc
1021 ctgctggctc tcgcccacca accaagtgtt acaagcccca gaatgctgcc cggcctgccc
1081 tgctgggcgg actgtctgtg tgtctgtctc tctggcgttc cacctccaag cctataccag
1141 ctgtgtacag cgccatctct ctgccttctg ttgcccctca ctcaccaaac acgtgtattt
1201 atagcaaaaa aaaaaaaaaa aaaaa
//