LOCUS BC033089 822 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens lipocalin 2, mRNA (cDNA clone MGC:45655
IMAGE:5421124), complete cds.
ACCESSION BC033089
VERSION BC033089.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 822)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 822)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 43 Row: k Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38455401.
FEATURES Location/Qualifiers
source 1..822
/db_xref="H-InvDB:HIT000041793"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45655 IMAGE:5421124"
/tissue_type="Pancreas, ductal carcinoma"
/clone_lib="NIH_MGC_110"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..822
/gene="LCN2"
/gene_synonym="NGAL"
/db_xref="GeneID:3934"
/db_xref="HGNC:HGNC:6526"
/db_xref="MIM:600181"
CDS 61..657
/gene="LCN2"
/gene_synonym="NGAL"
/codon_start=1
/product="lipocalin 2"
/protein_id="AAH33089.1"
/db_xref="GeneID:3934"
/db_xref="HGNC:HGNC:6526"
/db_xref="MIM:600181"
/translation="MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQD
NQFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRT
FVPGCQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGR
TKELTSELKENFIRFSKSLGLPENHIVFPVPIDQCIDG"
BASE COUNT 215 a 256 c 192 g 159 t
ORIGIN
1 tcttccaccc ctgccaggcc cagcagccac cacagcgcct gcttcctcgg ccctgaaatc
61 atgcccctag gtctcctgtg gctgggccta gccctgttgg gggctctgca tgcccaggcc
121 caggactcca cctcagacct gatcccagcc ccacctctga gcaaggtccc tctgcagcag
181 aacttccagg acaaccaatt ccaggggaag tggtatgtgg taggcctggc agggaatgca
241 attctcagag aagacaaaga cccgcaaaag atgtatgcca ccatctatga gctgaaagaa
301 gacaagagct acaatgtcac ctccgtcctg tttaggaaaa agaagtgtga ctactggatc
361 aggacttttg ttccaggttg ccagcccggc gagttcacgc tgggcaacat taagagttac
421 cctggattaa cgagttacct cgtccgagtg gtgagcacca actacaacca gcatgctatg
481 gtgttcttca agaaagtttc tcaaaacagg gagtacttca agatcaccct ctacgggaga
541 accaaggagc tgacttcgga actaaaggag aacttcatcc gcttctccaa atctctgggc
601 ctccctgaaa accacatcgt cttccctgtc ccaatcgacc agtgtatcga cggctgagtg
661 cacaggtgcc gccagctgcc gcaccagccc gaacaccatt gagggagctg ggagaccctc
721 cccacagtgc cacccatgca gctgctcccc aggccacccc gctgatggag ccccaccttg
781 tctgctaaat aaacatgtgc cctcaaaaaa aaaaaaaaaa aa
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