LOCUS BC032650 1899 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens aprataxin, mRNA (cDNA clone MGC:45060 IMAGE:5505120),
complete cds.
ACCESSION BC032650
VERSION BC032650.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1899)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1899)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: h Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28329426.
FEATURES Location/Qualifiers
source 1..1899
/db_xref="H-InvDB:HIT000092747"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45060 IMAGE:5505120"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1899
/gene="APTX"
/gene_synonym="AOA"
/gene_synonym="AOA1"
/gene_synonym="EAOH"
/gene_synonym="EOAHA"
/gene_synonym="FHA-HIT"
/gene_synonym="FLJ20157"
/gene_synonym="MGC1072"
/db_xref="GeneID:54840"
/db_xref="HGNC:HGNC:15984"
/db_xref="MIM:606350"
CDS 385..1149
/gene="APTX"
/gene_synonym="AOA"
/gene_synonym="AOA1"
/gene_synonym="EAOH"
/gene_synonym="EOAHA"
/gene_synonym="FHA-HIT"
/gene_synonym="FLJ20157"
/gene_synonym="MGC1072"
/codon_start=1
/product="aprataxin"
/protein_id="AAH32650.1"
/db_xref="GeneID:54840"
/db_xref="HGNC:HGNC:15984"
/db_xref="MIM:606350"
/translation="MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEA
EAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVV
IKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRL
GYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVR
DGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ"
BASE COUNT 503 a 405 c 482 g 509 t
ORIGIN
1 ccacgcgtcc gggagattta ttttttttag atgaggtgtt gctgtgttgc ccaagctgga
61 cttgaacccc taggctcaag caatccttcc acctcagtct cccaagtagc agggactaca
121 gagtgatgat gcgggtgtgc tggttggtga gacaggacag ccggcaccag cgaatcagac
181 ttccacattt ggaagcagtt gtgattgggc gtggcccaga gaccaagatc actgataaga
241 aatgttctcg acagcaagtt gaaagcagag tgtaacaagg gatatgtcaa ggtaaagcag
301 gtaggagtca atcccaccag cattgactca gtcgtaattg ggaaggacca agaggtgaag
361 ctgcagcctg gccaggttct ccacatggtg aatgaacttt atccatatat tgtagagttt
421 gaggaagagg caaagaaccc tggcctggaa acacacagga agagaaagag atcaggcaac
481 agtgattcta tagaaaggga tgctgctcag gaagctgagg ctgggacagg gctggaacct
541 gggagcaact ctggccaatg ctctgtgccc ctaaagaagg gaaaagatgc acctatcaaa
601 aaggaatccc tgggccactg gagtcaaggc ttgaagattt ctatgcagga ccccaaaatg
661 caggtttaca aagatgagca ggtggtggtg ataaaggata aatacccaaa ggcccgttac
721 cattggctgg tcttaccgtg gacctccatt tccagtctga aggctgtggc cagggaacac
781 cttgaactcc ttaagcatat gcacactgtg ggggaaaagg tgattgtaga ttttgctggg
841 tccagcaaac tccgcttccg attgggctac cacgccattc cgagtatgag ccatgtacat
901 cttcatgtga tcagccagga ttttgattct ccttgcctta aaaacaaaaa acattggaat
961 tctttcaata cagaatactt cctagaatca caagctgtga tcgagatggt acaagaggct
1021 ggtagagtaa ctgtccgaga tgggatgcct gagctcttga agctgcccct tcgttgtcat
1081 gagtgccagc agctgctgcc ttccattcct cagctgaaag aacatctcag gaagcactgg
1141 acacagtgat tctgcagagc ctgagctgct gctgtggtgt ggcccactgg agcaaactgc
1201 tggcacctat tctgggttgc ttgtgaactt ctactcattt cctaaattaa aacatgcagc
1261 tttttcacaa atttattcta ttattgagtg gccacaatgt agagtggctc aaagtacttc
1321 aggattagga atttgggttt gtcatagatg tattctctgg tgagggtggc tgggatatac
1381 ctgacccacc atcttcagaa ggacccatgt caggtctgac cattgggagc aaagccatgt
1441 tcacactgac ctaatgcaga gtatggaagc attgggctgg ttatacattt ctgtttctta
1501 gatttatcct ccgcctctgt aggcatggac aacctttaat cagagcatct agagtggcct
1561 cttgtttatc ctgaagatac tgatgggtct tgttttctgt tagtctgttt tgtaatattc
1621 ttttcccttc cttcatgggg aggcttagtt tgtccagtcc ttccatgccc ttctatccca
1681 gattacctaa atgttccctt ctcaggaatt ctgtctcatc agttcttcac agtgagaaaa
1741 gaggctagat gatggtgtgg ggggttggag ttttcttcta ataccgaggg ttcctggctg
1801 tgaggaaaca gccacatgtt cgtcatgatt gagctgtgaa gtcttcttgg acctgttgtc
1861 tgaaaataaa gttaatttgt ttgaaaaaaa aaaaaaaaa
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