LOCUS BC032587 2918 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens tubby like protein 3, mRNA (cDNA clone MGC:45295
IMAGE:5501868), complete cds.
ACCESSION BC032587
VERSION BC032587.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2918)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2918)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: g Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42544229
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2918
/db_xref="H-InvDB:HIT000041619"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45295 IMAGE:5501868"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2918
/gene="TULP3"
/gene_synonym="TUBL3"
/db_xref="GeneID:7289"
/db_xref="HGNC:HGNC:12425"
/db_xref="MIM:604730"
CDS 55..1383
/gene="TULP3"
/gene_synonym="TUBL3"
/codon_start=1
/product="tubby like protein 3"
/protein_id="AAH32587.1"
/db_xref="GeneID:7289"
/db_xref="HGNC:HGNC:12425"
/db_xref="MIM:604730"
/translation="MEASRCRLSPSGDSVFHEEMMKMRQAKLDYQRLLLEKRQRKKRL
EPFMVQPNPEARLRRAKPRASDEQTPLVNCHTPHSNVILHGIDGPAAVLKPDEVHAPS
VSSSVVEEDAENTVDTASKPGLQERLQKHDISESVNFDEETDGISQSACLERPNSASS
QNSTDTGTSGSATAAQPADNLLGDIDYLEDFVYSPAPQGVTVRCRIIRDKRGMDRGLF
PTYYMYLEKEENQKIFLLAARKRKKSKTANYLISIDPVDLSREGESYVGKLRSNLMGT
KFTVYDRGICPMKGRGLVGAAHTRQELAAISYETNVLGFKGPRKMSVIIPGMTLNHKQ
IPYQPQNNHDSLLSRWQNRTMENLVELHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQ
IVHKNDPDYIVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFDSKLACE"
BASE COUNT 785 a 738 c 683 g 712 t
ORIGIN
1 ccacgcgtcc gggggaagag tgtgtacgtg gtgggggctt cctcggtggc gggcatggag
61 gcttcgcgct gccggctcag tcccagcggc gacagtgtct tccatgaaga aatgatgaag
121 atgcgacagg ctaagctgga ttatcagagg ctactacttg agaagaggca aaggaaaaag
181 cgccttgagc catttatggt gcagcccaat ccagaagcca ggctacgtcg ggcaaagcca
241 agggccagtg atgagcagac tcccttggtg aactgtcata ctccccacag caatgtcatc
301 ttacatggta ttgatggtcc agctgctgtc ctgaaaccag acgaagttca tgctccatca
361 gtaagctcct ctgttgtgga agaagatgct gaaaacaccg tggatactgc ttccaagcca
421 ggacttcagg agcgtctcca aaagcatgat atctctgaaa gtgtgaactt cgatgaggag
481 actgatggaa tatcccagtc agcatgttta gaaagaccca attctgcatc aagccagaat
541 tcaaccgata caggcacttc cggttctgct actgccgccc aaccagctga taacctcctg
601 ggagacatag actacctgga ggactttgtg tatagtcctg cccctcaagg tgtcacagta
661 agatgtcgga taatccggga taaaagggga atggatcggg gtctcttccc cacctactat
721 atgtacttgg aaaaagaaga aaatcagaag atatttcttc ttgcagctag aaagcggaaa
781 aagagcaaaa cagccaacta ccttatctcc attgatccag ttgatttatc tcgtgaagga
841 gaaagttatg tcggcaagct tagatccaac ctcatgggga ccaagtttac agtttatgac
901 cgtggcatct gccccatgaa gggccggggt ttggtaggag cggcccacac ccggcaggag
961 ctggctgcca tctcctatga aacaaacgta cttggattta aaggtcctag gaaaatgtct
1021 gtgatcattc ctggaatgac actgaatcat aagcagatcc cctatcagcc acaaaacaac
1081 catgacagtt tgctctcaag gtggcagaac agaactatgg aaaatctggt tgagctgcac
1141 aacaaggccc ccgtctggaa cagtgacact cagtcctatg tcctcaactt ccgtggccgg
1201 gtcactcagg cgtctgtgaa gaacttccag atagtccaca aaaatgaccc tgattatata
1261 gtcatgcagt ttggacgtgt ggcagatgac gtgttcacac tggattacaa ctacccactt
1321 tgtgcagtac aggcctttgg catcggtctt tctagctttg acagtaagct ggcgtgtgaa
1381 tgagagaaca gtcaggcagg gagcccttct ccccacagag ctttcaggag cagacagtgg
1441 cctccccttc ccctccctgc cccaggactt aaagagcaat agtttgcccc ttttggaatg
1501 atctctgaat atataaaaca cacacacaaa gagcaatagt ttgccccttt tggaacgacc
1561 cctgaatata taaaacacac acacaccccg cgcactctca ctccttttcc aggtttcata
1621 gacttggtga gggatcacag cttagcatgg gtgagagatg atttaaagca cagggagatt
1681 cttgtcacat tggggtctcc aaagctagaa tgggatttca tgtgcttgga aacttgcagt
1741 agaatcaggg actgacatcg cagttcctct cctctcttca ttccctcaca gcagattggc
1801 cggcaccaat cttagtcaag agtggctgtg atcacatttg tgatcaatta tgtgagaatt
1861 ttatataatt gtcttcattt caattaaggc tgaaagcata aactctagag gtgactcagt
1921 caggactgac agtaatgtga taattgcctt cattttcaac ccaggagtgc ctctcacagc
1981 tatatgacta cggatccatt agtgaggagc gacacacaca cctgtaggca tcctgtgcaa
2041 acactttgtc attatcaaga gagatggcag tattgaccat ttagtttagt taaaaaaaaa
2101 aaaaaaaagg tggcaggaga ggctttgggg aggatcagcc agcagacatg agcactgctg
2161 gcccgtgtgg cagagctgtg gactttcttc tcggctccct caaccctggc tcaggcacag
2221 aaggtgtttt gctacgtttt tttgattatt acacccctcc acgtattatg tgactcttac
2281 accagttcac ccttcccaga atgtatccaa accttgagaa tgcaggagct ctgtgagctc
2341 caccgtcagc accattcagc tgcatccctt gtgcacagaa ctgtttgcca gcgttgggtg
2401 ggacacccgt ggcggctgct ccctcagacc tcccttctgt ggactgacct ctcacctccg
2461 cctgttgttc ctgcaccaca tcagataagc atgtgaagga gggccaactg gcagctgcgg
2521 gacccttggc ttgtccccca ccgacaagtc ccacctgctg ggtgaggacg agactgtttc
2581 catctcaggc atgtatccca ccaagtgcct ccctcacagc catgcccaga agcctcacac
2641 ctcgtcacca ccaccacccc ccaccccatc ctgaggcact gcctggcaga taaccctggt
2701 tggccacaga agctattaat acacgacagc atgtggggaa ggacttatgg tgggccaggt
2761 ggacctcatc ctgcttcttc ctccctctgg tttaaagaga tatataaact aatttcacat
2821 aatttgtgtg tgcaggtgat tggtttttac ataagtccta tttatacctt ttatatgtta
2881 cagaaataaa agttaattta tataaaaaaa aaaaaaaa
//