LOCUS BC031839 1978 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens HLA-B associated transcript 5, mRNA (cDNA clone
MGC:24847 IMAGE:4931559), complete cds.
ACCESSION BC031839
VERSION BC031839.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1978)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1978)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: n Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 15100150.
FEATURES Location/Qualifiers
source 1..1978
/db_xref="H-InvDB:HIT000041381_10"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24847 IMAGE:4931559"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1978
/gene="BAT5"
/gene_synonym="D6S82E"
/gene_synonym="NG26"
/db_xref="GeneID:7920"
/db_xref="HGNC:HGNC:13921"
/db_xref="MIM:142620"
CDS 35..1711
/gene="BAT5"
/gene_synonym="D6S82E"
/gene_synonym="NG26"
/codon_start=1
/product="HLA-B associated transcript 5"
/protein_id="AAH31839.1"
/db_xref="GeneID:7920"
/db_xref="HGNC:HGNC:13921"
/db_xref="MIM:142620"
/translation="MAKLLSCVLGPRLYKIYRERDSERAPASVPETPTAVTAPHSSSW
DTYYQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGT
LLLLLAGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNFDFRSWPVDF
HWEEPSSRKESRGGPSRRGVALLRPEPLHRGTADTLLNRVKKLPCQITSYLVAHTLGR
RMLYPGSVYLLQKALMPVLLQGQARLVEECNGRRAKLLACDGNEIDTMFVDRRGTAEP
QGQKLVICCEGNAGFYEVGCVSTPLEAGYSVLGWNHPGFAGSTGVPFPQNEANAMDVV
VQFAIHRLGFQPQDIIIYAWSIGGFTATWAAMSYPDVSAMILDASFDDLVPLALKVMP
DSWRGLVTRTVRQHLNLNNAEQLCRYQGPVLLIRRTKDEIITTTVPEDIMSNRGNDLL
LKLLQHRYPRVMAEEGLRVVRQWLEASSQLEEASIYSRWEVEEDWCLSVLRSYQAEHG
PDFPWSVGEDMSADGRRQLALFLARKHLHNFEATHCTPLPAQNFQMPWHL"
BASE COUNT 416 a 562 c 561 g 439 t
ORIGIN
1 tgctgctgga agagcagcgg cccgagccgg ggccatggcg aagctgctga gctgcgtcct
61 aggcccccgg ctctacaaaa tctaccggga gagggactct gaaagggccc cggccagcgt
121 ccctgagacg ccaacggcag tcactgcccc ccattccagc tcctgggata cgtactatca
181 gccccgtgcc ctggagaaac atgctgacag catcctggca ctggcttcag tattctggtc
241 catctcttat tactcctctc ccttcgcctt cttctacttg tacaggaaag gttacttgag
301 tttgtccaaa gtggtgccgt tttctcacta tgctgggaca ttgctgctac ttctggcagg
361 tgtggcctgc ctccgaggca ttggccgctg gaccaacccc cagtaccggc agttcatcac
421 catcttggaa gcaacacatc ggaaccagtc ttcagaaaac aagaggcagc ttgccaacta
481 caactttgac ttccggagct ggccagtcga cttccactgg gaagaaccca gcagccggaa
541 ggagtctcga gggggccctt cccgccgggg tgtggccctg cttcgcccag agcccctgca
601 ccgggggaca gcagacaccc tcctcaaccg ggttaagaag ctgccttgtc agatcaccag
661 ctacctggtg gcgcacaccc tagggcgccg gatgttgtat ccaggctctg tgtacctgct
721 gcagaaggcc ctcatgcctg tgctgctgca gggccaggcc cgactggtgg aagagtgtaa
781 tgggcgccgg gcaaagctgc tggcctgtga tggcaatgag attgacacca tgtttgtgga
841 ccggcggggg acagctgagc cccagggaca gaagctggtg atctgctgtg aggggaatgc
901 tgggttttat gaggtgggct gcgtctccac gcccctggaa gctggatatt cagtcctggg
961 ctggaatcat ccaggctttg ctggaagcac gggggtgcca ttcccgcaga atgaggctaa
1021 tgccatggat gtggtggtcc agtttgccat ccaccgcctg ggcttccagc cccaggacat
1081 catcatctac gcctggtcca tcggcggctt cactgccacg tgggcagcca tgtcctaccc
1141 agatgttagt gccatgatcc tggatgcctc ctttgatgac ctggtgccct tggccttgaa
1201 ggtcatgcca gacagctgga ggggcctggt gaccaggacc gtgaggcagc atctcaatct
1261 aaacaacgcg gagcagctgt gcagatacca gggtcctgta ctgctgatcc ggagaaccaa
1321 ggatgagatc atcaccacca cggttcctga ggacatcatg tccaaccgag gcaatgacct
1381 cctgctgaag ctcctgcagc atcggtatcc ccgggtgatg gcagaggagg gtcttcgagt
1441 ggtgaggcag tggttggagg cctcctcaca gctggaggaa gcctcaattt atagccgatg
1501 ggaggtggaa gaggactggt gtctgtctgt cctccgctcc taccaggcag aacacgggcc
1561 cgacttcccc tggagcgtgg gggaggacat gagtgcagat ggacggcggc agctggcttt
1621 gtttctggct cggaagcatc tgcacaactt tgaggccact cactgcaccc cactcccagc
1681 ccagaacttc cagatgccct ggcacctcta gggaccaact gggactcatt atggaagaat
1741 ggggtgagag gagacatgag gaaagaccct cttatttgtg attctctgtg ttcatgttgc
1801 tgtttatagt ttgtggaaag tgggggacca tcccccttct caccactgtt cctcttgcac
1861 gtttcccctc attcatgtgg ctgtacttaa ccttctccaa catacatcct gcattacatg
1921 aatggattat tcctaataat taataaaaag gtattttttc tactaaaaaa aaaaaaaa
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