LOCUS BC031476 4288 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ST6 beta-galactosamide alpha-2,6-sialyltranferase 1,
mRNA (cDNA clone MGC:17105 IMAGE:4339124), complete cds.
ACCESSION BC031476
VERSION BC031476.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4288)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4288)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: o Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27765094
This clone grew slowly and was rescued by PCR.
FEATURES Location/Qualifiers
source 1..4288
/db_xref="H-InvDB:HIT000259028"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17105 IMAGE:4339124"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4288
/gene="ST6GAL1"
/gene_synonym="CD75"
/gene_synonym="MGC48859"
/gene_synonym="ST6Gal I"
/gene_synonym="ST6GalI"
/db_xref="GeneID:6480"
/db_xref="HGNC:HGNC:10860"
/db_xref="MIM:109675"
CDS 305..1525
/gene="ST6GAL1"
/gene_synonym="CD75"
/gene_synonym="MGC48859"
/gene_synonym="ST6Gal I"
/gene_synonym="ST6GalI"
/codon_start=1
/product="ST6 beta-galactosamide
alpha-2,6-sialyltranferase 1"
/protein_id="AAH31476.1"
/db_xref="GeneID:6480"
/db_xref="HGNC:HGNC:10860"
/db_xref="MIM:109675"
/translation="MIHTNLKKKFSCCVLVFLLFAVICVWKEKKKGSYYDSFKLQTKE
FQVLKSLGKLAMGSDSQSVSSSSTQDPHRGRQTLGSLRGLAKAKPEASFQVWNKDSSS
KNLIPRLQKIWKNYLSMNKYKVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPF
NTSEWEGYLPKESIRTKAGPWGRCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTAN
FQQDVGTKTTIRLMNSQLVTTEKRFLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYN
FFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPPSSGMLGIIIMMTL
CDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYL
LGKATLPGFRTIHC"
BASE COUNT 1077 a 1066 c 995 g 1150 t
ORIGIN
1 gttcctgtag ggcggcacaa ccagggaggg cgtggaagct ctgcatccct tctcccatac
61 cttgctctac acatctcttc atctgtatcc tctgcagcat ccttgatgat aaaccagtaa
121 atatgagttt tgatcatcct gagaaaaatg ggccttggcc tgcagaccca ataaaccttc
181 cctcccatgg ataatagtgc taattcctga ggacctgaag ggcctgccgc ccctggggga
241 ttagccagaa gcaggcttgt tttcctgctc agaacaaagt gacttccctg aacacatctt
301 cattatgatt cacaccaacc tgaagaaaaa gttcagctgc tgcgtcctgg tctttcttct
361 gtttgcagtc atctgtgtgt ggaaggaaaa gaagaaaggg agttactatg attcctttaa
421 attgcaaacc aaggaattcc aggtgttaaa gagtctgggg aaattggcca tggggtctga
481 ttcccagtct gtatcctcaa gcagcaccca ggacccccac aggggccgcc agaccctcgg
541 cagtctcaga ggcctagcca aggccaaacc agaggcctcc ttccaggtgt ggaacaagga
601 cagctcttcc aaaaacctta tccctaggct gcaaaagatc tggaagaatt acctaagcat
661 gaacaagtac aaagtgtcct acaaggggcc aggaccaggc atcaagttca gtgcagaggc
721 cctgcgctgc cacctccggg accatgtgaa tgtatccatg gtagaggtca cagattttcc
781 cttcaatacc tctgaatggg agggttatct gcccaaggag agcattagga ccaaggctgg
841 gccttggggc aggtgtgctg ttgtgtcgtc agcgggatct ctgaagtcct cccaactagg
901 cagagaaatc gatgatcatg acgcagtcct gaggtttaat ggggcaccca cagccaactt
961 ccaacaagat gtgggcacaa aaactaccat tcgcctgatg aactctcagt tggttaccac
1021 agagaagcgc ttcctcaaag acagtttgta caatgaagga atcctaattg tatgggaccc
1081 atctgtatac cactcagata tcccaaagtg gtaccagaat ccggattata atttctttaa
1141 taactacaag acttatcgta agctgcaccc caatcagccc ttttacatcc tcaagcccca
1201 gatgccttgg gagctatggg acattcttca agaaatctcc ccagaagaga ttcagccaaa
1261 ccccccatcc tctgggatgc ttggtatcat catcatgatg acgctgtgtg accaggtgga
1321 tatttatgag ttcctcccat ccaagcgcaa gactgacgtg tgctactact accagaagtt
1381 cttcgatagt gcctgcacga tgggtgccta ccacccgctg ctctatgaga agaatttggt
1441 gaagcatctc aaccagggca cagatgagga catctacctg cttggaaaag ccacactgcc
1501 tggcttccgg accattcact gctaagcaca ggctcctcac tcttctccat caggcattaa
1561 atgaatggtc tcttggccac cccagcctgg gaagaacatt ttcctgaaca attccagcct
1621 gctcctttta ctctaggggc ctctgtcagc aagaccatgg ggacttcaag agcctgtggt
1681 caggaaatca ggtccagcct tccctgtagc cagacagttt atgagcccag agcctcctgc
1741 cacacacatg cacacatatc tagcattctt tccagacagc atcctccccg ccttccacct
1801 tggtagatgc aaggtctatc tctcccatca gggctgccaa agctgggctt tgtttttccc
1861 agcagaatga tgccattctc acaaaccaat gctctatatt gcttgaagtc tgcatctaaa
1921 tattgatttc acgttttaaa gaaattctct taaattacaa ttgtgcccaa tgcagggtgg
1981 ctctgggggg caagtaggtg gtacagggga ttggaaacat gctccgcgcc tccagagaaa
2041 agttgctccc gaggtccatg cccctggaac gtgttcctat cactctggct ggttgggctg
2101 gtccttagac tgggtgctta tgattaaagg gtcttggtta gcccactttc cctctccatg
2161 tggagatgga aggtagagaa ggatacagtg tctatcctca agttgctacg gttcagtgag
2221 agaggcagac atctgaacag gcaggtagga ttcagtgtgc tcagtgcact ggggatttgg
2281 agagagatgg gcttgctctc tctgtgcacc caggagggcc acgcacttaa aactgtgttt
2341 gtggatcaga gaaggcttta tagcacaggg ggcattcaga tgagtcttag aggaagagaa
2401 gaaacatggc aagcagatta catctgagcc gtttgaattg tgtttttctt tcttcccatg
2461 tttattttct aagatctacc tgaacttaga gactcaagat atttttttag gaaacctcct
2521 acccatgtct gaggtagcaa gtgcagcctc acgacagata ccaggcaatc cagagccaca
2581 aaacgtgatt cctccaggct ctgcctggcc tgaccctgtc ctgtcagctg ggtttacata
2641 ccagtcccat tcttcctttt caatacctac ccccaaatct tctcctaacc accatctgtt
2701 tttttttttt aaagcatttt ttgctttaaa agcatcctga ccccaatttc tttgagctca
2761 cgggcctttt gctgaaggtc tctcagggtg tagtggtgtg gctctctgga cttaacgtca
2821 ctctcagagg tcagaacctt ggagatcaga actgattctc accaggtgtg agaggtgtgg
2881 tagcagattg caatgctctg cacctcttcc ttgcaagtga gcaacttcag gctctctggg
2941 cagaggctgg cccactgtag tttgcagaca tgctctccag atggttttac taagtcccct
3001 ctccctgata gggaatcctg ctggaccagc gcagccctgg tgtggagagg ttaaaagact
3061 tgcacaggat caccaagtca tgctgtagag ccaggattcc tagacccagg gctctgcact
3121 ctcaaggctg gccccatgtg ctcaagggga tctaatgttt gggctccaaa ctaaccatct
3181 cggagctggg ctcctcattt actgccaaac cctcagctta tgtagctaga aagggccctg
3241 gagtgagaaa gcctggattt tcaaattgat gctcccctac tgactagctg tgccactctg
3301 ggcaaatgct cttccttgag cctgtttcca cacctgtaaa gtggggatga tgatcctatc
3361 tcactgcttt tgtgaggatt acaggaaagc acctgtcctg gctctgtacc tggcacgtag
3421 taggtgctca gttcatgctg gtttccttcc tgcctttagt agggacctgc tctgtgctca
3481 cacctcggct gcatgcaccc tgctgtgacg gaggctagtg tggaagaggt cctgtcctca
3541 gggaattaac tgtcttattg ggagacaata actgtcctcc ttggaacacc caagaaacca
3601 tgcaaagcag tggacaacac agaacacgcc ctcctcctcg ctgcctgcag ctccaatctg
3661 attctgcttg ggaatgggcg gagcacgtgg gctgcttaac tgctgtatag gacaagcccc
3721 ttacccctct ctgggcccat gaattcctgg cttggtttat gttctgattt gacacactga
3781 ttttaatctt cgaatcatga cactgagtgc agaggaggtg gcattccgac agcaggacat
3841 acatgttggt gtgaagactg ggacgacact gggtagaatc tagtttttaa ttattattaa
3901 tataaaggat caaattaatt taaatatgat tctgaagtct acagaacttt tagttctgtg
3961 ctgtctatgt ggacactttg gtaaaatgca aattatgata tggacgttat cattggtctg
4021 gtgagatgtt tcatatttgt gacagttaat ttaaaaatta tgacttaatg ctgcctgtgt
4081 ctatggggtt ctgtcttctt tgatagccat ctattcatct ggatcatggg accctctcta
4141 atccttccac caatcaaata agctattgct attggtttgg agttgagata tcagtctcgg
4201 aaacttctga aaaatgctaa taattaccca aggattatgt caaattttaa aataaatgtg
4261 tgtgtgtttc tttaaaaaaa aaaaaaaa
//