LOCUS BC031264 2683 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens vesicle-associated membrane protein 4, mRNA (cDNA
clone MGC:39731 IMAGE:5275603), complete cds.
ACCESSION BC031264
VERSION BC031264.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2683)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2683)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: j Column: 5
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2683
/db_xref="H-InvDB:HIT000041268"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39731 IMAGE:5275603"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2683
/gene="VAMP4"
/gene_synonym="VAMP24"
/db_xref="GeneID:8674"
/db_xref="HGNC:HGNC:12645"
/db_xref="MIM:606909"
CDS 203..628
/gene="VAMP4"
/gene_synonym="VAMP24"
/codon_start=1
/product="VAMP4 protein"
/protein_id="AAH31264.1"
/db_xref="GeneID:8674"
/db_xref="HGNC:HGNC:12645"
/db_xref="MIM:606909"
/translation="MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGP
RFGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRS
KQLRRQMWWRGCKIKAIMALVAAILLLVIIILIVMKYRT"
BASE COUNT 838 a 461 c 528 g 856 t
ORIGIN
1 gggcggaggc gctgctgcgg cgctgcggcc gacgccgggt ccgcaccaac tgtctccccc
61 tcccagcttc ttacctcggc ttcctactcc ttcccccgcc cgcccagcac cgccagcccg
121 ggagagctgc cgggagttcc ccgggagcct caggtggtga ctatcctgtt gagaagcaaa
181 agatactttg caagtaaaaa atatgcctcc caagtttaag cgccacctca atgatgatga
241 tgtcacaggt tctgtgaaaa gtgaaaggag aaatcttttg gaagatgatt cagatgaaga
301 agaggacttt tttctaaggg gaccatctgg accaagattt ggacctagaa atgataaaat
361 taagcatgtt cagaatcaag tggatgaagt tattgatgtc atgcaagaaa atattacaaa
421 ggtaattgag agaggggaga gactagatga actacaggac aaatcagaaa gcttatcgga
481 taatgcaaca gcttttagca acagatccaa acaacttcga aggcaaatgt ggtggcgtgg
541 atgcaaaata aaagccatca tggctttggt tgctgctatc cttttgctag tgattatcat
601 tcttatagtc atgaaatacc gtacttgatt tgatgacaga gatcttcatt aaacaagatc
661 tgggacagta ataaaagatt gctgcataat ttaaatgaaa cctatgtgta tataactttc
721 aaaacttctt tttcaagaaa ctaagagctc agatcatcct gcacttgaaa aatgaagttt
781 taccaccatc aaaactatca ttatttaaca acaagtgaag atcaacagaa aaattcaagt
841 agctttgcaa atactagttg atactcagtg aaatcacgtc actattttga tgcctgaatc
901 catacctttg tgatttatgt ttaattacag aagcctattg ccttgcagca attttgttgt
961 tataatactg attaattggt tactccttct tattataact cagtaatacc tgtggtcatt
1021 tggttcctct atcctgacaa agttcactgg aaattgccct cagattttat aaactggggg
1081 atttcttaat tagataaaag ttcattactg aagatggaat attatataag atggaggaag
1141 ggtaattaat agacatgaga tatagaaata ctttgttagc cctgctatag attgcctatt
1201 gtagtctttc tgtgcatttc aatagtctgt attaggaaat tataacttca gcacttttga
1261 tagcaaaaat tggcatcttt caattctgta tagtatgtga ctatcctgta aatgataata
1321 tgtgtacaga ctgagaaggc aggaatataa agtaattgta atctctcatt gccggtatac
1381 tctaaaacat gcttgatgcc ttgtcagcat cattgcacac attgactctg tatttacatc
1441 tgtatataca ctatgattag aaaatatgca agaaattgtt tttccatgtt aagaacaaat
1501 gccattagaa gatgtcccct taattgtatt gtcagagtat tattatgtca aggatgactg
1561 ttctgttaac ctaattttgt gttttcacat ggaaatgtga ttggactcca tttttctgtg
1621 agttgagagt aagagcataa gtcagtttga aagcatttac aagtttgttt tagaatgtag
1681 taagggctga aaggtgctct acttcttaac ttgttttttc catgttgtag acaaatgaaa
1741 tttgtctaaa tgcttttgtc taaaaatgca tttgtctaaa tgctttagat tgatgtaggg
1801 tttagatcct ctttaatact ttgagatagt cttattctga tttttttttt cttctggaaa
1861 ccaagtagaa ttagggatgg gaatacaaat gcatttattc tggcttctgt tttattccaa
1921 gaagcttctt ggaacaaatc agtaggaatt gaaaagaaag catgaccaac ccaattacag
1981 gggataaatg taagcttgtt aaagtaagca ccacaccatg tttctgtctc cccagcaccc
2041 agcacagtgc tgtgaacctt ggcagatgct agataaatgt gtgttgaatg aatgtgccta
2101 tgaagccaca aagatgccac atgttagtat atcagtgaga ggtgactcca cagtgctctc
2161 tggagaagca atatgagtga ctgaagagtg gggccttttg cgtttgcctg gatatagggg
2221 tgctcttcta ctgtaattgg gtgtggaaaa actctggctt tatggtattc cattaggttc
2281 ttttcattta aagtagtctt aaaatcaaag tatccaatat tttaaagcca caaagtagat
2341 tacataatta gcagagattt tagtcagtaa aatgttagaa atcaaactat aagaaaattc
2401 aagtccttta ttttgtgtct tgggtatatg tcgttatttt aaattccaca ctcccttatt
2461 taatcacttt ggtaagtgcc tttgatgttt tgaaatgtat agtgggagat gagcaaatgt
2521 aaatgtcatg tgccctgttc cctagcttct caattcctca taaccatttt taccagtgtt
2581 gcaaagttta gacctttgtg ttaatatcag aagtgtattt gtagcccctc catagtgaac
2641 aatgaaataa actatttcat agaaaacaaa aaaaaaaaaa aaa
//