LOCUS BC031059 2391 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens Leber congenital amaurosis 5-like, mRNA (cDNA clone
MGC:33295 IMAGE:5271223), complete cds.
ACCESSION BC031059
VERSION BC031059.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2391)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2391)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC031059.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: b Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 53832012.
FEATURES Location/Qualifiers
source 1..2391
/db_xref="H-InvDB:HIT000041226"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33295 IMAGE:5271223"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2391
/gene="LCA5L"
/db_xref="GeneID:150082"
/db_xref="HGNC:HGNC:1255"
CDS 315..2327
/gene="LCA5L"
/codon_start=1
/product="Leber congenital amaurosis 5-like"
/protein_id="AAH31059.1"
/db_xref="GeneID:150082"
/db_xref="HGNC:HGNC:1255"
/translation="MSLADLTKTNIDEHFFGVALENNRRSAACKRSPGTGDFSRNSNA
SNKSVDYSRSQCSCGSLSSQYDYSEDFLCDCSEKAINRNYLKQPVVKEKEKKKYNVSK
ISQSKGQKEISVEKKHTWNASLFNSQIHMIAQRRDAMAHRILSARLHKIKGLKNELAD
MHHKLEAILTENQFLKQLQLRHLKAIGKYENSQNNLPQIMAKHQNEVKNLRQLLRKSQ
EKERTLSRKLRETDSQLLKTKDILQALQKLSEDKNLAEREELTHKLSIITTKMDANDK
KIQSLEKQLRLNCRAFSRQLAIETRKTLAAQTATKTLQVEVKHLQQKLKEKDRELEIK
NIYSHRILKNLHDTEDYPKVSSTKSVQADRKILPFTSMRHQGTQKSDVPPLTTKGKKA
TGNIDHKEKSTEINHEIPHCVNKLPKQEDSKRKYEDLSGEEKHLEVQILLENTGRQKD
KKEDQEKKNIFVKEEQELPPKIIEVIHPERESNQEDVLVREKFKRSMQRNGVDDTLGK
GTAPYTKGPLRQRRHYSFTEATENLHHGLPASGGPANAGNMRYSHSTGKHLSNREEME
LEHSDSGYEPSFGKSSRIKVKDTTFRDKKSSLMEELFGSGYVLKTDQSSPGVAKGSEE
PLQSKESHPLPPSQASTSHAFGDSKVTVVNSIKPSSPTEGKRKIII"
BASE COUNT 945 a 427 c 462 g 557 t
ORIGIN
1 gagaagcacc aaaagaggca aactgagatg cagacaaatg atcatccgta tgctgatcat
61 tttgaatagt tttttaaaat atattctttc tttaaaaaga gaccaaaacc tgtcaaaaaa
121 aatactaccg tggaaagctc ataaatacta cagtgtgaag aaccctgtgc ttatcttcag
181 tttatcatca gacatcttag ggaagtttaa taaagaacac caggagaatt gagaattaaa
241 tgaaaaggta aatcctttta aagacctcag aagatggatc tgtttgtttc aatctgcttt
301 tgaggttgtt tgctatgtct ttggctgatc taacaaaaac aaatatagat gagcatttct
361 tcggcgtggc attagaaaac aataggaggt ctgcagcatg caagagaagc ccaggcacag
421 gcgatttttc acggaacagt aatgcttcca ataagagtgt tgattatagc agatctcagt
481 gctcctgtgg aagtttaagt tctcagtatg attattcaga agactttctc tgtgattgtt
541 cagaaaaggc tattaataga aattatttaa agcagcctgt ggtaaaagaa aaggagaaga
601 aaaagtataa tgtttctaaa atctcccaat ctaaaggcca gaaggaaata tcagttgaaa
661 aaaagcacac ctggaatgca tcactcttta attctcaaat ccatatgatt gcccaaagaa
721 gagatgctat ggctcatcga atactctcag caaggcttca taaaattaaa ggactaaaaa
781 atgaattagc tgatatgcat cataaattgg aagccatcct tacagaaaac caatttttga
841 aacaacttca gcttaggcat ttgaaagcta taggaaaata tgagaattca caaaataatc
901 tacctcaaat tatggctaaa catcagaatg aagtaaaaaa tttaaggcaa ctacttagga
961 aatcccagga aaaggaaaga actctatcta ggaaacttag agaaactgac agccagttac
1021 tgaagactaa agatatcttg caggcactgc agaaactttc tgaagacaaa aaccttgcag
1081 aaagggaaga actcactcat aaattatcta ttatcacaac aaaaatggac gcaaatgaca
1141 aaaaaataca gagcttggaa aaacaactga ggttgaactg cagagccttt agccggcagc
1201 tggctattga gactcggaag actttagcag ctcagacagc taccaagact ctgcaggtgg
1261 aagtaaaaca ccttcaacaa aaacttaagg aaaaggatcg tgagcttgaa attaaaaaca
1321 tctatagtca tcgaatactt aaaaatttac atgacacaga ggactatcca aaagtttctt
1381 caacaaaatc agtccaagca gacagaaaaa ttttgccatt cacaagtatg agacaccagg
1441 gaacccaaaa atcagatgtt ccacctttga caactaaggg taaaaaggca acaggaaaca
1501 tcgatcataa agaaaaatca actgaaataa atcatgaaat tcctcactgt gtgaataaac
1561 taccaaagca agaggattct aagagaaaat atgaagattt atcaggggaa gagaaacatt
1621 tggaagtcca aatactgctg gagaatactg gaagacaaaa agacaaaaaa gaagaccaag
1681 aaaagaaaaa catttttgtg aaagaagagc aagaactacc accaaaaata attgaagtta
1741 ttcatcctga aagagaaagc aatcaagaag atgttctagt aagagaaaag tttaaaagaa
1801 gcatgcagag aaatggtgtg gatgacacac ttggcaaagg cactgctccc tacacgaaag
1861 gccccctcag acaaagaaga cattactcat tcacagaagc aactgaaaac ctgcatcatg
1921 ggcttcctgc ttcagggggg ccagccaatg ccggcaacat gaggtacagt catagtacag
1981 gcaagcatct cagtaacaga gaggaaatgg agctagagca ttctgacagt gggtatgagc
2041 cctcatttgg taagtcttcc agaataaaag tgaaggatac aactttcaga gataagaaaa
2101 gcagtctcat ggaagaactc tttggatcag gctatgtctt gaaaactgac caatcaagtc
2161 ctggtgttgc aaaaggctca gaggagcctt tgcaaagtaa ggagtcgcat cccctgcctc
2221 ccagtcaggc ctccaccagc catgctttcg gagactctaa agtaactgtg gtaaattcta
2281 ttaagccatc gtcacctaca gaaggaaaaa gaaaaataat tatttaaata taatcaatat
2341 cctaatgcat tctggtttga tataaaaaaa aaaaagaaaa aaaaaaaaaa a
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