LOCUS BC030827 4277 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens hippocalcin like 4, mRNA (cDNA clone MGC:26229
IMAGE:4811834), complete cds.
ACCESSION BC030827
VERSION BC030827.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4277)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4277)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: j Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19913444.
FEATURES Location/Qualifiers
source 1..4277
/db_xref="H-InvDB:HIT000041160"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26229 IMAGE:4811834"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4277
/gene="HPCAL4"
/gene_synonym="DKFZp761G122"
/gene_synonym="HLP4"
/db_xref="GeneID:51440"
/db_xref="HGNC:HGNC:18212"
CDS 118..693
/gene="HPCAL4"
/gene_synonym="DKFZp761G122"
/gene_synonym="HLP4"
/codon_start=1
/product="hippocalcin like 4"
/protein_id="AAH30827.1"
/db_xref="GeneID:51440"
/db_xref="HGNC:HGNC:18212"
/translation="MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILN
LEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLN
WAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQ
DKDDQITLEEFKEAAKSDASIVLLLQCDMQK"
BASE COUNT 1108 a 1051 c 1025 g 1093 t
ORIGIN
1 gactccggcg cagaccttgg agagcacagc tgccggcccg cgagccagcc tcggttcccg
61 cggcccgccg aggctcggag ccatccagcg acccggcgac cggcctcagg ccccgccatg
121 gggaagacca acagcaagct ggcccccgag gtgctggagg accttgttca gaacactgag
181 ttcagcgagc aggagctgaa gcagtggtac aagggcttcc tgaaggactg ccccagcggc
241 atcctcaacc tggaggagtt tcagcagctc tacatcaagt tcttccccta cggcgacgcc
301 tccaagttcg cgcagcacgc tttccgcacc ttcgacaaga acggcgacgg caccatcgac
361 ttccgggagt tcatctgcgc cctgtcggtc acctcccgcg gcagcttcga gcagaagctc
421 aactgggcct ttgagatgta cgacctggac ggcgacgggc gcatcacgcg cctggagatg
481 ctggagatca tcgaggcaat ctacaagatg gtgggcaccg tgatcatgat gcgcatgaac
541 caggacgggc tcacgcccca gcagcgtgtg gacaagatct tcaagaagat ggaccaggat
601 aaggacgacc agattacatt ggaggagttc aaggaggcag ccaagagtga cgcatccatt
661 gtgttgctgc tgcagtgtga catgcagaag tagaagctgg tgaggggcag ggtccctggc
721 cagaaggggc atggccacct cccaacctga tgacctctct ggctggcctc ccaggaggag
781 ggacactcca gccccccctc tctggcccac ccagtcctct gcccaagccc ttcctcccct
841 ccatcaagat ctttgaggga ccacctcacc ctgcaaaaga gacaggtcct ccagtaccct
901 gtcttctagc cccacctccc acttggccag aaccaatgtc cattgggcat aggtgagttg
961 gctttttccc caggaggtga ggttaaggag ttgggggcct ggggttctgg ttaggaattc
1021 tcttgatcct gggattatgc tttataggat gtggtcccac aggcctgtca cagggccaaa
1081 ttgggtctgt ccattcctga ggctccagat cccataaagg gggtctcttc cccatccctt
1141 ctactctacc tggcccttcc agccccagca tttggagcgt tcattcagtc ctttcttcag
1201 ctaatgatta ctgagcacct gtttggtgct aaggatatgg tcatttacaa gacacatctt
1261 gtgccctctg gaagctcata gggttgtgag gcaaacttcc agccgtcagg gtctcagcta
1321 agcagaaggt gctggaaggc tggttagtct gggaggagct atttcatctt ccagctcagc
1381 tccacacaaa gctgcagaag gacgaaatga aaagcatttg gaagtttagg agccacgtga
1441 gtgaaagttt taagaaaaat gaaatttatg tcatacttat ttttttagta ccctttaaag
1501 gagctacagt cattttatta tttcaggagg ttaaaatata ctctatatta cttggtttct
1561 tataaaatga ttaaatgaat agagaaaata ttaattttca aggggaaaaa acctgagaag
1621 aaagggagaa aagaccatga aatttaccag ataacacttt ttaagactaa gtcctgagct
1681 gccactctca gcagtttttg ctgcttcagc ttttcctttt tattaccttt ttcaattcaa
1741 caagcaactt tctgctacat acttactccg gttgggtgct gacttcaggg acaggaaaaa
1801 gcaaggtttg caaagagtga aactagtgta tattccgtat cttggtagtt cgtttctgga
1861 ttgggtttag tttcagaact ggacttgttc cttcactgcc acagaatcag aaagagctag
1921 aagaaaaggc tcacctggcc actgtttagg cacccagaca taatttatgg acgaaatgcc
1981 taaaaatgtg ccaggcatgc tctgtttgag aggctttttc taaccccaaa tcttagatct
2041 gccaggtagt tcaacatctt ccaagtgtgc tggttctgct ttccaatgcc tgcttcccaa
2101 ttttggatcc atgagctata cagctgcatg ctttgactgc cggaaaaatt aatcttgctt
2161 cttcatcagg tctttctcct gtacttgtga tcagaaatta cctttgacgt gcagtgacag
2221 ttgatttcct cttgaactgc cggtgaaaac agtctagtac acaggtgctg tcagcccagg
2281 gtgggagcag gaaatgattg ctgagcccgg ggcaggggaa ttgcatctgc aggaaagaga
2341 tgcagcatgc tcctcactcc tgagtgccca cctgtcctgc ttctctgcag gtgaaaactc
2401 tgggggatgc tgatcaatag agcttggtcc caagctctac tgggcgcttg gaggtagcaa
2461 ggccactggg ttgctatcct cttgctgggg atagcaacca ctggtttgca accactgggt
2521 tgctatcctt ttgctatcct cttgctcatg accagccata tggtgaggct ggggagttca
2581 catcctcagg caggaactag cagttgttta tccagcaatg cctcaaggat gttgcattgc
2641 tcccaggaac tggctattag gtatgtcttg tgcggtcagt cagcatcaca gacacataga
2701 tgctcaccag cctggcttag ctgggaccta aatcttctgg tgaaaagctt ttcactaagt
2761 gaggttcctt ccctgcaaat gctgaatcta gcctaattcg caaccacaca gaatttcatg
2821 gctttcaaag gcttgccatg tgccccatct cattctatac tcacatccca tggaggtgag
2881 gattttcact tcttttctct agacttggaa gctgagattc agagaggaag catcccttgt
2941 gcaagatcac atagtcagga ggtgacacag ggctaagact tgaaccaagg ctctaagagg
3001 atttcttctt ttcagagtct cttccctgtc catttctgtg actaagctgt gcagaggttg
3061 acagcagggc aagttacatt gatattcatc ctttataggc ttcctgctaa aaagcttctg
3121 agattgtggt cttccaaaaa aaataggagc ttggttgaag tccccacatt ttcaagcact
3181 cagtgttctg cctctggcag ctgtgctaac agctcagtgc tgtcctggga gtcctctgac
3241 tcagaaccct cgaagcatcc tgcattgtct ttacccacca tcatcttcac taagagaaac
3301 atgcctaccc atgaaggcgt gtttgattac tccaggcttc tggacacaca tacccatggg
3361 tgatttttgc tcctcaggcc caatattctc agacagcaca gcagtgtgaa cacacaatgc
3421 caggccagga actgggacca ccatcttgct gatggaagga acaacaggtg gcccaggaca
3481 tgctcctgca tactcctggg tgtcccaggg actgtgtgct caggagcact gtggtagagc
3541 actggccctg ccttgagaag agacacaggt ctcccgtccc tgcaccagct gagagagact
3601 tgccgcaaag cacaaggctg gcagagattt atgtatgact tgcacagaca caaaaatata
3661 cagacaatca aaacattgat atattcaaac tctcctttaa attccaatct tattgcaaca
3721 actctgtgaa ttgcaaggtc ccagaatctg ccttctcaca tactctaccc tcattcatcc
3781 ttttgggcta attgatgagc atcttatttc ttatctctaa aaattatcag caaaggctac
3841 ttcagatggc cactttagtc ctttcagctg tagtcaggat tatttaactt acctgtatat
3901 caaaagtgaa gaaaaagtta gttcataagt aaaggcacta aatcctttcc tgacaatggc
3961 agagtctcta gaggtagaaa tttgccttgc tgcagagaga gaaggaatgg cgtgggatgg
4021 gggaaagaaa agaaagagaa gaagctgggg tctccaggca gggtagtaag ctgacactaa
4081 atatttttta cacaaaaatg tattgaagca acaaatattt cctgaagatc caccctgggt
4141 gaggctttga gctgacttta gagatcactg tggggtcaag aatgtcttac atgttttatt
4201 catcattctt gaaaaaagaa ataattcaaa ccttggaatt aaaaagtcag aaaaatatgg
4261 gaaaaaaaaa aaaaaaa
//